Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00306 ATGGCTTCTTTGACTTCCTCTTCTGCGTCATCTTCATCGACCAAGAAGCATCCTTTGTACAGAGGAATTCGGTGCAGGGGTGGAAAATGGGTGTCGGAGATCCGGGAGCCACGTAAGACGACACGCATATGGCTCGGTACATTTCCGACACCCGAGATGGCTGCCACAGCTTACGACGTTGCCGCTCTCGCTCTCCGAGGTGATCAAGCCATCCTTAACTTCCCCTCCTCTGTTGCCTCCTATCCTGTTCCTGTCTCCACCTCCCCGCTTGACATACGCAATGCTGCCGCCGCCGCCGCCGCCAATGCGTTGAACAAAGTTGAGACTTGCCGCACTAACATTGAAGATAGTGGTAATACGGCGTCGTTCGTGGATGAGGAGGAGATTTTTGGGATGCCAAGTTTGCTGGCCGACATGGCGGAGGGGATGATGGTGTCGCCGCCAAGAATGAACTCTCCGCCGCTGTCTGATGACAACTCCGATGGAGCGGAATGTTTATGGAACTATTTTTTATGA 516 53.68 MASLTSSSASSSSTKKHPLYRGIRCRGGKWVSEIREPRKTTRIWLGTFPTPEMAATAYDVAALALRGDQAILNFPSSVASYPVPVSTSPLDIRNAAAAAAANALNKVETCRTNIEDSGNTASFVDEEEIFGMPSLLADMAEGMMVSPPRMNSPPLSDDNSDGAECLWNYFL 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1715512 1716027 - Cp4.1LG05g03770.1 Cpe05g00306 469511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00306 171 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Cpe05g00306 171 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Cpe05g00306 171 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
Cpe05g00306 171 SMART rav1_2 19 81 IPR001471 GO:0003700|GO:0006355
Cpe05g00306 171 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Cpe05g00306 171 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Cpe05g00306 171 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Cpe05g00306 171 ProSiteProfiles AP2/ERF domain profile. 19 75 IPR001471 GO:0003700|GO:0006355
Cpe05g00306 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 170 - -
Cpe05g00306 171 PANTHER ETHYLENE RESPONSE FACTOR 9 170 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00306 Cpe13g00177 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00246 Cpe-Chr3:1228923 Cpe05g00306 Cpe-Chr5:1715512 3.78E-36 dispersed
Cpe05g00306 Cpe-Chr5:1715512 Cpe08g01036 Cpe-Chr8:7953089 2.41E-51 dispersed
Cpe14g00828 Cpe-Chr14:6704885 Cpe05g00306 Cpe-Chr5:1715512 1.54E-13 dispersed
Cpe05g00305 Cpe-Chr5:1712001 Cpe05g00306 Cpe-Chr5:1715512 7.53E-36 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49498 PF00847 AP2 1.40E-10 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00306 - - cmax:111491416 297.36