Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe05g00306 | ATGGCTTCTTTGACTTCCTCTTCTGCGTCATCTTCATCGACCAAGAAGCATCCTTTGTACAGAGGAATTCGGTGCAGGGGTGGAAAATGGGTGTCGGAGATCCGGGAGCCACGTAAGACGACACGCATATGGCTCGGTACATTTCCGACACCCGAGATGGCTGCCACAGCTTACGACGTTGCCGCTCTCGCTCTCCGAGGTGATCAAGCCATCCTTAACTTCCCCTCCTCTGTTGCCTCCTATCCTGTTCCTGTCTCCACCTCCCCGCTTGACATACGCAATGCTGCCGCCGCCGCCGCCGCCAATGCGTTGAACAAAGTTGAGACTTGCCGCACTAACATTGAAGATAGTGGTAATACGGCGTCGTTCGTGGATGAGGAGGAGATTTTTGGGATGCCAAGTTTGCTGGCCGACATGGCGGAGGGGATGATGGTGTCGCCGCCAAGAATGAACTCTCCGCCGCTGTCTGATGACAACTCCGATGGAGCGGAATGTTTATGGAACTATTTTTTATGA | 516 | 53.68 | MASLTSSSASSSSTKKHPLYRGIRCRGGKWVSEIREPRKTTRIWLGTFPTPEMAATAYDVAALALRGDQAILNFPSSVASYPVPVSTSPLDIRNAAAAAAANALNKVETCRTNIEDSGNTASFVDEEEIFGMPSLLADMAEGMMVSPPRMNSPPLSDDNSDGAECLWNYFL | 171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1715512 | 1716027 | - | Cp4.1LG05g03770.1 | Cpe05g00306 | 469511 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe05g00306 | 171 | PRINTS | Ethylene responsive element binding protein signature | 20 | 31 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe05g00306 | 171 | PRINTS | Ethylene responsive element binding protein signature | 57 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe05g00306 | 171 | Gene3D | AP2/ERF domain | 19 | 77 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe05g00306 | 171 | SMART | rav1_2 | 19 | 81 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe05g00306 | 171 | CDD | AP2 | 18 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe05g00306 | 171 | Pfam | AP2 domain | 18 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe05g00306 | 171 | SUPERFAMILY | DNA-binding domain | 19 | 77 | IPR016177 | GO:0003677 | |
Cpe05g00306 | 171 | ProSiteProfiles | AP2/ERF domain profile. | 19 | 75 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe05g00306 | 171 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 9 | 170 | - | - | |
Cpe05g00306 | 171 | PANTHER | ETHYLENE RESPONSE FACTOR | 9 | 170 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe05g00306 | Cpe13g00177 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00246 | Cpe-Chr3:1228923 | Cpe05g00306 | Cpe-Chr5:1715512 | 3.78E-36 | dispersed | |
Cpe05g00306 | Cpe-Chr5:1715512 | Cpe08g01036 | Cpe-Chr8:7953089 | 2.41E-51 | dispersed | |
Cpe14g00828 | Cpe-Chr14:6704885 | Cpe05g00306 | Cpe-Chr5:1715512 | 1.54E-13 | dispersed | |
Cpe05g00305 | Cpe-Chr5:1712001 | Cpe05g00306 | Cpe-Chr5:1715512 | 7.53E-36 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49498 | PF00847 | AP2 | 1.40E-10 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe05g00306 | - | - | cmax:111491416 | 297.36 |