Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00311 ATGTCGAATCAAGATCTAGAGCGAGGAGCGGCTAAAAATCCACCGAATAGTAACCCAACTGGGAACTATTCAGCTCCGCCTTACCACGTAGAAACTTCCGAGAAGCAGTGGACGCCATGGCTAGTTCCTATGTTTGTTGTGGCTAATATTGCTATGTTCATTGTGGTCATGTACGTTAATAATTGCCCCAAAACCAATCTGGGTTTTGGAGATAAGTGTGTGGCCGGTTTTCTTGGGCGGTTTTCATTTCAGCCCTTGAAGGAGAATCCCCTCTTGGGGCCCTCTTCCAATACATTGGTGAAATTGGGAGCTTTGAAATGGGATAAGGTCGTCCATGAGCATCAAGGATGGAGACTCCTCTCCTGTATTTGGTTGCACGCTGGTATCATTCATCTTCTTGCAAATATGTTGAGTTTGGTTGTGATTGGGATCCGCCTTGAGCAGCAATTTGGATTTGTGCGCATCGGAATAATATATCTCGTGGCTGGAGTTGGTGGTAGCGTAATGTCTTCCCTGTTCATCCAAAACAATATTTCGGTTGGTGCTTCTGGTGCCCTCTTTGGACTTCTCGGCGCTATGCTATCTGAGCTCTTGACAAACTGGACGATTTACACCAACAAGGCTGCTGCACTCTTTACCCTCATCGTTATCGTAGCAATTAACTTGGCAGTTGGAATTCTACCTCATGTAGACAACTTCGCGCACATTGGAGGATTCTTAACAGGATTCCTTCTCGGGTTTGTGTTGCTCATTCGTCCCCAGTTTAAATGGATTGAACGCCATCATCTGCCACCCAGTGCTCAACGTGTGCCCAAGTATAAAATTTACCAGTATATTCTCTGGATTGTTGCTGCAATTCTACTAGTTGCTGGTTTTACTGTTGGGCTGGTGATGCTATTCAGGGGGGAGAACGGCAACAAGCACTGCAGCTGGTGCCATTACTTGAGCTGTGTGCCGACCTCAAGATGGGACTGTGGGAACTAA 984 46.44 MSNQDLERGAAKNPPNSNPTGNYSAPPYHVETSEKQWTPWLVPMFVVANIAMFIVVMYVNNCPKTNLGFGDKCVAGFLGRFSFQPLKENPLLGPSSNTLVKLGALKWDKVVHEHQGWRLLSCIWLHAGIIHLLANMLSLVVIGIRLEQQFGFVRIGIIYLVAGVGGSVMSSLFIQNNISVGASGALFGLLGAMLSELLTNWTIYTNKAAALFTLIVIVAINLAVGILPHVDNFAHIGGFLTGFLLGFVLLIRPQFKWIERHHLPPSAQRVPKYKIYQYILWIVAAILLVAGFTVGLVMLFRGENGNKHCSWCHYLSCVPTSRWDCGN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1735860 1739963 - Cp4.1LG05g03670.1 Cpe05g00311 469516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00311 327 SUPERFAMILY Rhomboid-like 36 255 IPR035952 -
Cpe05g00311 327 Gene3D - 72 256 IPR035952 -
Cpe05g00311 327 MobiDBLite consensus disorder prediction 1 27 - -
Cpe05g00311 327 Pfam Rhomboid family 111 252 IPR022764 GO:0004252|GO:0016021
Cpe05g00311 327 PANTHER RHOMBOID-LIKE PROTEIN 7 327 - -
Cpe05g00311 327 PANTHER RHOMBOID-RELATED 7 327 IPR002610 GO:0004252|GO:0006508|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00311 - - - csv:101203649 612.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00381 Cpe-Chr2:2100877 Cpe05g00311 Cpe-Chr5:1735860 3.82E-06 dispersed
Cpe02g01227 Cpe-Chr2:11078387 Cpe05g00311 Cpe-Chr5:1735860 3.54E-151 dispersed
Cpe03g00114 Cpe-Chr3:573844 Cpe05g00311 Cpe-Chr5:1735860 8.05E-91 dispersed
Cpe05g00311 Cpe-Chr5:1735860 Cpe20g00824 Cpe-Chr20:7451126 1.01E-138 dispersed
Cpe10g01031 Cpe-Chr10:5995234 Cpe05g00311 Cpe-Chr5:1735860 3.35E-06 transposed
Cpe14g00836 Cpe-Chr14:6790811 Cpe05g00311 Cpe-Chr5:1735860 1.46E-162 transposed
Cpe13g00173 Cpe-Chr13:1364685 Cpe05g00311 Cpe-Chr5:1735860 3.16E-38 wgd
Cpe14g00119 Cpe-Chr14:643272 Cpe05g00311 Cpe-Chr5:1735860 3.24E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g376 . . . . . . . Bma14g00584 . Cmo16g01061 . . . . . . Cpe05g00311 . . . . . . . . . . . . . . . . . . . . . . . . . Bda09g00049 . . . . . . . . . . . . . Bhi12g00209 . . Lac11g2129 Hepe06g1577 . Lcy12g1689 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000228 6 5 4 5 7 5 5 5 5 5 4 5 7 5 5 6 5 6 6 5 5 5 5 5 5 4 5 12 7 4 163
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00311 Cpe_Chr05 FPKM 14.859051 16.465479 0.273582 0.0 0.261428 0.0 0.072259 0.60981 0.315299 0.510388