Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00314 ATGGTGTCTAAGGGTTCGCCGGACTGGCTTCCCTCCGGCTGGACTGTGCAGTTTAAAGTCCAGAAGACGGGCAGGAAAATTAGGTTCTATACAAACTTGGAGAGTGGAAAAAGCTTTTATTCTAAGGATGATGTTATTGGATATATTAAAAGCGTTCAGTCTCAAAAGTCTTCACCAACTTCAAGTCGCATCAAAACGCAGTCAGGAAATAGTCCAGTGCAACTCACAGTAAAAGCAAATGAACGCCCTGAATGGTTGCCTGCTGGCTGGAAAGTGGAGTCAAGAACACGAATGAGTGGTTCGAATGTTGGAGGAGTATACAAGTGTTACATTGATCCAGTGACAGGCAACAGATTTTATTCTAAGCCAGAGGTATTTCGATACCTCAGAACAGTGAAAAACAAAGTGTGCACATTGAAGGAGAGAAAGACAAGCAACGGCAAGAAGTCTAGAACCCATGTTGTTATTGAGCATTATAAAGATGAAGATTTGCCGCCTGGATGGATAAAGGAGATCAAGATCAGAGAAAAAGCAGATGGCATTAGGAAAGATCCCTTTTACATAGATCCAAAATCTGGATATGTATTCCGCTCCAAGAAGGACGTTTTACGCTATCTTGAGACCGGAGAGATCAGTAGACATGCATTTAAACCAAAGGAAGGGGTTGATAATGATCAAGAATCGATTAATCACAAAATAATATCAAGCCCTTCTACTGCTAAAGGACAGAAACCAGAGCACCCTACAGCAACCCCACAACCTCTTGCAGATGTTGTAGGGAAGGAAATGCCAACAGAGAGCAGTTCAGAATTTCCAGGAGACCAAATTCTACTACCATCGGGGCGATATGGGAACCTGTCTTCTGAACTGAATGCTTCTGTTTCGCGTGTTGGAACTGTCACAAAGATTGTTTCGTCGCTGGTCAGGGAGCCTTCTGAAATCAAAGAGAAAAGTCGGAGAAGTTCAGCATCTCCTGAACCTGATCTTCCAGATGGTAAGGAAACTGAAAGAGCATCAGATGATGTACCAGTTTCAACTTCTGCTTCTGAGTTGGAGCAAGAGAAGGCATTGCCAAAAGCTGAAAAGCAAGAAAGTAATAAAGTTGATCCTGAAAACACTCCACTTTCAACCACTGCATCGAAGTTGCAACAAGAGAAGACTGCAATCTGTGATGTGATGGAAATGGGTGACAATGGGGAAAAGATAGAGACAGAACGAGATGACAATGGGGAAAATACAGAGACGGAAGGAGGCGACAATGGGGAACATACAGAAACTAAAAGAGTTGACAGTAGGAAAAAGACGAAGACAAGGAGGTTCAAGAAGAAGAAAGATATCAGCTTGCCTCGAAGGTCTTCGAAACGACTTGCTGGACGAAAACCAGAGTCGGCGCGTAAAGTAGAGGCAAAAGAAGTTCCTCAAGCTTCGAATAGAAACTGTCTTACTAAAGTTAGTCCAGATGCTGATAAAGCATGTCAGCAGCACAATGTAGGGCCAGAAAGGGTCAATGAAGATCATGGATCTAAATTCAAGGACATACCATTGCATGAAAATCCTTCTAATAAGAGGAAAACCCCTCCGGAATGCGGCCTAGATGTCCCACAAGAGAAAATACAGAGAATACGAACTGAAAAAAAGGATGATGTACAGATTGAAGCGCAGCTGAGTGTTCCAATTGCTGAATTTTGGTCAGACCCATGTCTGGAATTTGCAATCAAGACCCTTACAGGCGCATTGCCAGTGGAGAACGCAACCACCACCGATGGGCTAGTTTCTGATCCTACAATTGATTTCCTGCAAGGGCAGAAATCAGTCAAAAATGGTTCGGGAAGCTGCATGGATAAGAGAACTCAAGAGAACACAAAATTCAAGAACAAGAAAGAGTTCACATCAAATCGTCAATCTTCAAGTACTAATGGGCTCAAACCTGAATTGGCATCAAATATAATATCCTTTCAACAAGCAAACGATCGTTCAAATGAAGCTGTTCTAGCTTTCAATTTATCAGACAGTGGAATACTTGGAGAACCACAGAATGAACCGTGTAAAACATCTTGCCAAAAATTTCCACCCAGAGAGCTGCATCACCCTCCACCGGATAGGATCAATACATGTCACGAGAGCAACAAAATGGCGCTCGATGATCTGAATCAAAAGCATCAAACGAAAGACACAACCTCTGAAACTCCAATAGCCTTCCCATTTGGAGATTCCTGGGCAGACCCGTGCTTGGATTTTGCATTCAAGACTCTCACGGGTGCAATACCAATAGAAGGTAGTCTGGAAATTCAAAGCTACTTTGAGGAGCGAATCGAGTCCTCTCGAAGCCAAAGAGAGAGTAGCATAGCGCTTCCAGATTATGGATCCCCGAACTTCTTCCAAAACGATATATCGTCCCACTTTGATGGACCCGAAAAATCTGGTTCAGTACAGCACTTGAGTTTAGATCCTCTGCTGGGGAATGTGAATCTACCAAGCTGCAGTGGGTTCACTTCTCAACAGCAGCCTCGCGTAGATAGAAACAGACCTTTCAAGGGAAGGTGA 2544 43.36 MVSKGSPDWLPSGWTVQFKVQKTGRKIRFYTNLESGKSFYSKDDVIGYIKSVQSQKSSPTSSRIKTQSGNSPVQLTVKANERPEWLPAGWKVESRTRMSGSNVGGVYKCYIDPVTGNRFYSKPEVFRYLRTVKNKVCTLKERKTSNGKKSRTHVVIEHYKDEDLPPGWIKEIKIREKADGIRKDPFYIDPKSGYVFRSKKDVLRYLETGEISRHAFKPKEGVDNDQESINHKIISSPSTAKGQKPEHPTATPQPLADVVGKEMPTESSSEFPGDQILLPSGRYGNLSSELNASVSRVGTVTKIVSSLVREPSEIKEKSRRSSASPEPDLPDGKETERASDDVPVSTSASELEQEKALPKAEKQESNKVDPENTPLSTTASKLQQEKTAICDVMEMGDNGEKIETERDDNGENTETEGGDNGEHTETKRVDSRKKTKTRRFKKKKDISLPRRSSKRLAGRKPESARKVEAKEVPQASNRNCLTKVSPDADKACQQHNVGPERVNEDHGSKFKDIPLHENPSNKRKTPPECGLDVPQEKIQRIRTEKKDDVQIEAQLSVPIAEFWSDPCLEFAIKTLTGALPVENATTTDGLVSDPTIDFLQGQKSVKNGSGSCMDKRTQENTKFKNKKEFTSNRQSSSTNGLKPELASNIISFQQANDRSNEAVLAFNLSDSGILGEPQNEPCKTSCQKFPPRELHHPPPDRINTCHESNKMALDDLNQKHQTKDTTSETPIAFPFGDSWADPCLDFAFKTLTGAIPIEGSLEIQSYFEERIESSRSQRESSIALPDYGSPNFFQNDISSHFDGPEKSGSVQHLSLDPLLGNVNLPSCSGFTSQQQPRVDRNRPFKGR 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1747256 1755286 - Cp4.1LG05g03710.1 Cpe05g00314 469519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00314 847 MobiDBLite consensus disorder prediction 605 642 - -
Cpe05g00314 847 MobiDBLite consensus disorder prediction 354 368 - -
Cpe05g00314 847 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 76 149 IPR001739 GO:0003677
Cpe05g00314 847 Pfam Methyl-CpG binding domain 80 134 IPR001739 GO:0003677
Cpe05g00314 847 Pfam Methyl-CpG binding domain 162 210 IPR001739 GO:0003677
Cpe05g00314 847 MobiDBLite consensus disorder prediction 432 449 - -
Cpe05g00314 847 MobiDBLite consensus disorder prediction 499 523 - -
Cpe05g00314 847 MobiDBLite consensus disorder prediction 310 531 - -
Cpe05g00314 847 SUPERFAMILY DNA-binding domain 8 54 IPR016177 GO:0003677
Cpe05g00314 847 PANTHER OS04G0193200 PROTEIN 6 836 - -
Cpe05g00314 847 PANTHER OS04G0193200 PROTEIN 6 836 IPR038945 -
Cpe05g00314 847 MobiDBLite consensus disorder prediction 369 385 - -
Cpe05g00314 847 Gene3D - 81 140 - -
Cpe05g00314 847 MobiDBLite consensus disorder prediction 235 276 - -
Cpe05g00314 847 MobiDBLite consensus disorder prediction 396 431 - -
Cpe05g00314 847 Gene3D - 141 255 - -
Cpe05g00314 847 Gene3D - 5 77 - -
Cpe05g00314 847 MobiDBLite consensus disorder prediction 310 340 - -
Cpe05g00314 847 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 1 71 IPR001739 GO:0003677
Cpe05g00314 847 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 154 229 IPR001739 GO:0003677
Cpe05g00314 847 SUPERFAMILY DNA-binding domain 81 135 IPR016177 GO:0003677
Cpe05g00314 847 MobiDBLite consensus disorder prediction 450 472 - -
Cpe05g00314 847 SUPERFAMILY DNA-binding domain 158 212 IPR016177 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00314 - - - mcha:111026151 1067.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01230 Cpe-Chr2:11097349 Cpe05g00314 Cpe-Chr5:1747256 1.31E-09 dispersed
Cpe05g00314 Cpe-Chr5:1747256 Cpe20g00820 Cpe-Chr20:7417591 8.23E-07 dispersed
Cpe14g00111 Cpe-Chr14:602249 Cpe05g00314 Cpe-Chr5:1747256 4.35E-07 wgd
Cpe05g00314 Cpe-Chr5:1747256 Cpe09g00096 Cpe-Chr9:544636 3.95E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g367 . . . . . . . . . . . Cma15g01410 . Car15g01272 . . Cpe05g00314 . . . . . . . . . . . . . . . Cone12ag0321 . . . . . . . . . . . . . . . . Cmo15g01482 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010700 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00314 Cpe_Chr05 FPKM 0.322275 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0