Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00333 ATGGCTCTGACTGGTTCGGCTCACCGGATTGGTGTAGAGAGTGTACGACGGAGTGGAGGATTTATGGCTTTCAAGTTGTGCACTCATATGGAGTCGTTGAAGATGAAGGAGAATCTTATTAGTGCGTCTTCTCTGTCGTACAGTTCTGGTAATCTCGCGGATGGTTTGCGTATAGACAGCGCGAGGATGAGGTCGAAGCGTGGAGGTAGGGTGATTGTTGCTACGGGTGCACCGGCCGAGGAAGCAACAGTGGCTACCCAACCGTTGACGAAAGAGGATCTCGTGGCTTATTTAGCTTCTGGATGCAAGCCAAAGGAAAAGTGGAGTTCTGGTAATCTCGCGGATGGTTTGCGTATAGACAGCGCGAGGATGAGGTCGAAGCGTGGAGGTAGGGTGATTGTTGCTACGGGTGCACCGGCCGAGGAAGCAACAGTGGCNGGACAGCGCGAGGATGAGGTCGAAGCGTGGAGGTTGATTGTTGCTACGGGTGCACCGGCCGAGGAAGCAACAGTGGCTACCCAACCGTTGACGAAAGAGGATCTCGTGGCTTATTTAGCTTCTGGATGCAAGCCAAAGGAAAAGTGGAGAATTGGCACAGAACATGAGAAGTTTGGATTCCAGATTGGAAGTTTACGTCCCATGACGTACGAGCAAATAAGTGGGTTGCTAAACGGGCTTGCAGAGAGGTTTGGTTGGGAAAAAGTAATGGAAGGCAGCGACATTATAGGGCTCCGGCAGGGTATGCAAGGTATATCACTGGAACCTGGGGGTCAATTTGAACTCAGTGGTGCCCCTCTTCAAACTTTGCATCAAACCTGTGCTGAAGTTAATTCACACCTTTACCAGGGACGATACAAGATTATAGAGAATTACATGCCCAAAGTTGGTTCACTTGGGCTGGACATGATGCTTAGGACATGCACCGTGCAGGTTAATCTAGATTTTGATTCCGAAGCCGACATGATCAGAAAGTTCCGAGTGGGTCTTGCTCTTCAACCTATAGCAACTGCTCTGTTTGCCAATTCACCATTTACCGAAGGAAAGTCAAATGGTTATTTGAGCATGAGAAGCCAAATATGGACCGATACTGATAATAGCCGCACTGGTATGCTTCCATTTGTATTCGATGACTCCTTCGGATTTGAGAAGTATGTTGATTATGCTCTTGATGTTCCAATGTATTTCATATATCGGAAAAAGAAGTTTATTGACTGTTCTGGAATGTCCTTCAGGGACTTCATGGCAGGAAAGCTCTCTCCAGTTCCTGGAGAATTTCCAACACTTTCTGATTGGGAAAATCACTTGACTACAATATATCCAGAGGTCAGGTTGAAGAGATATTTGGAGATGAGGGGTGGTGATGGGGGCCCTTGGAGGAGAATATGTGCTCTGCCAGCATTTTGGGTTGGTTTATTATATGACGAAGTTTCCCTGCAAAATGCTTTAGACATAACAGCTGACTGGACACCTGAAGAAAGACAGATGTTGAGGAATGAGGTTCCAATAACCGGTCTCAACACACCATTTCGTGATGGGTTGCTGAAGCACGTTGCTCAAGATGTTGTTGAGTTAGCAAAGGATGGCTTAAAGAGAAGAGGTTTCAAGGAGTCTGGCTTCTTGAATGAGGTGACTGAAGTAGCTAGAACAGGTGTGACACTGGCTGAAAAGATGTTAGGATTGTATAATGGAAAATGGGGACAAAATGTAGATCCAGTTTTCGAGGAGCTTCTATATTAA 1737 46.57 MALTGSAHRIGVESVRRSGGFMAFKLCTHMESLKMKENLISASSLSYSSGNLADGLRIDSARMRSKRGGRVIVATGAPAEEATVATQPLTKEDLVAYLASGCKPKEKWSSGNLADGLRIDSARMRSKRGGRVIVATGAPAEEATVAGQREDEVEAWRLIVATGAPAEEATVATQPLTKEDLVAYLASGCKPKEKWRIGTEHEKFGFQIGSLRPMTYEQISGLLNGLAERFGWEKVMEGSDIIGLRQGMQGISLEPGGQFELSGAPLQTLHQTCAEVNSHLYQGRYKIIENYMPKVGSLGLDMMLRTCTVQVNLDFDSEADMIRKFRVGLALQPIATALFANSPFTEGKSNGYLSMRSQIWTDTDNSRTGMLPFVFDDSFGFEKYVDYALDVPMYFIYRKKKFIDCSGMSFRDFMAGKLSPVPGEFPTLSDWENHLTTIYPEVRLKRYLEMRGGDGGPWRRICALPAFWVGLLYDEVSLQNALDITADWTPEERQMLRNEVPITGLNTPFRDGLLKHVAQDVVELAKDGLKRRGFKESGFLNEVTEVARTGVTLAEKMLGLYNGKWGQNVDPVFEELLY 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1850273 1856606 - Cp4.1LG05g03440.1 Cpe05g00333 469538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00333 578 Pfam Glutamate-cysteine ligase family 2(GCS2) 226 280 IPR006336 GO:0004357|GO:0042398
Cpe05g00333 578 Pfam Glutamate-cysteine ligase family 2(GCS2) 282 488 IPR006336 GO:0004357|GO:0042398
Cpe05g00333 578 Gene3D - 282 578 - -
Cpe05g00333 578 Gene3D - 161 281 - -
Cpe05g00333 578 SUPERFAMILY Glutamine synthetase/guanido kinase 187 576 IPR014746 GO:0003824
Cpe05g00333 578 PANTHER GLUTAMATE--CYSTEINE LIGASE 282 578 - -
Cpe05g00333 578 PANTHER GLUTAMATE--CYSTEINE LIGASE 156 282 - -
Cpe05g00333 578 PANTHER GLUTAMATE--CYSTEINE LIGASE 50 112 - -
Cpe05g00333 578 TIGRFAM glu_cys_lig_pln: glutamate--cysteine ligase 282 578 IPR011556 GO:0004357|GO:0006750
Cpe05g00333 578 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 50 112 IPR035434 GO:0004357|GO:0006750
Cpe05g00333 578 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 282 578 IPR035434 GO:0004357|GO:0006750
Cpe05g00333 578 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 156 282 IPR035434 GO:0004357|GO:0006750
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00333 K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] - csv:101218859 771.541
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00333 Cpe13g00158 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00333 Cpe-Chr5:1850273 Cpe05g00335 Cpe-Chr5:1864805 5.52E-136 proximal
Cpe13g00158 Cpe-Chr13:1158381 Cpe05g00333 Cpe-Chr5:1850273 1.47E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g324 . . . Bda08g00517 Bpe05g00644 Bpe07g00110 . . . . Cma02g01454 Cma15g01225 Car02g01220 Car15g01105 . . Cpe05g00333 . . . . . . . . . . . . . . Cone8ag0307 . Cone6ag0777 Cone9ag0782 . Csa05g00283 Chy09g01225 . . . . . . . Bma05g00819 Bma12g00077 . Cmo02g01489 Cmo15g01290 . . . . . Cpe13g00158 Bhi12g00258 . . Lac11g2094 Hepe06g1546 . Lcy12g1653 Cla01g00266 Cam01g0273 Cec01g0266 Cco01g0281 Clacu01g0273 Cmu01g0261 Cre09g2247 Lsi09g00261 . . Cme09g01761
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006691 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 2 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00333 Cpe_Chr05 FPKM 2.928964 3.441442 4.962759 4.834794 1.597057 2.029943 2.327507 0.0 0.0 0.0