Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00334 ATGGGGAACCGAAGATTTGCGCAGGTTTCTACTAGCGATGAGGAAGATGAAGTGCCGGCAACGAAGCAGCAATTCTCTAATTCAGACGACAACTTGCCAATTCGGAGGAAGAGGAAGAAGATGAAGTTCATAGAGGAAGAGGAGGAGGAGCTGGAGGAGGAAGGGGAAGAGAGAAATCGCAGGAGTAGAAGGAGTAGAAACAAGGGAGAGAAGGAGGTGGAAGCTTATAAACAGCAGGCAGATGATGAAAATGAGGACGATCAGTCGCAAGAGGACGCGAAGCCGGTTGGGGATGCTGTTAGGGTTTCTGGGAAAGGGAGGGGAAGGAAGAGCCATTACAATGCGTTTGAATATGATGGGAACAGATATGATCTCGAGGATCCGGTACTTCTGGTTCCTGAGGACAAGGATCAAAAACCTTATGTGGCAATTATCAAGAATAATCGTTTACTAGCTCAACGGCTGTTAAATGGAGAGTTGGAGCCATCAAAAATCCTGAATATGTCACCCAATGAACTCAAGGATGGATTGACTGCTGAGGAGATGGCAGCAACTAAAGAGCCTGATGAGTCCGAGCGTATGCAGTTGGAGTGCATTGCCTGTGGTCATTCTTGGTACGCCTCTAGGGATGAACTCTCTATGCTGACGATAGATGCGGCAACTAATTCTACAAAAAGTGTTGGCACCGCACCATGGGCAACTGCCAAATTTGAAGATGTGGAGAAGAGTCTACTCAGTCCCCGTGAACCCGAAAAAGCCACCGAGGACCTCTTCAAGAAAACGAGTGAAGCATACATGCCCGTATTGGATAGCCCGAAATCAAACAAGTCTAGAAAGGAAGATAACACAGAACCTGCTAAAAATGCACAGTAA 873 46.96 MGNRRFAQVSTSDEEDEVPATKQQFSNSDDNLPIRRKRKKMKFIEEEEEELEEEGEERNRRSRRSRNKGEKEVEAYKQQADDENEDDQSQEDAKPVGDAVRVSGKGRGRKSHYNAFEYDGNRYDLEDPVLLVPEDKDQKPYVAIIKNNRLLAQRLLNGELEPSKILNMSPNELKDGLTAEEMAATKEPDESERMQLECIACGHSWYASRDELSMLTIDAATNSTKSVGTAPWATAKFEDVEKSLLSPREPEKATEDLFKKTSEAYMPVLDSPKSNKSRKEDNTEPAKNAQ 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1858359 1862041 + Cp4.1LG05g03590.1 Cpe05g00334 469539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00334 290 Pfam Transcription factor S-II (TFIIS), central domain 146 187 IPR003618 GO:0006351
Cpe05g00334 290 MobiDBLite consensus disorder prediction 55 78 - -
Cpe05g00334 290 MobiDBLite consensus disorder prediction 240 290 - -
Cpe05g00334 290 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 192 286 - -
Cpe05g00334 290 MobiDBLite consensus disorder prediction 241 259 - -
Cpe05g00334 290 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 146 - -
Cpe05g00334 290 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 145 195 - -
Cpe05g00334 290 MobiDBLite consensus disorder prediction 273 290 - -
Cpe05g00334 290 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 192 286 - -
Cpe05g00334 290 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 146 - -
Cpe05g00334 290 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 145 195 - -
Cpe05g00334 290 Coils Coil 66 86 - -
Cpe05g00334 290 Coils Coil 34 64 - -
Cpe05g00334 290 MobiDBLite consensus disorder prediction 31 46 - -
Cpe05g00334 290 MobiDBLite consensus disorder prediction 1 113 - -
Cpe05g00334 290 Gene3D - 84 168 IPR043151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00334 - - - csv:101218620 250.366
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00334 Cpe13g00157 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00334 Cpe-Chr5:1858359 Cpe05g00336 Cpe-Chr5:1870812 1.04E-95 proximal
Cpe13g00157 Cpe-Chr13:1147702 Cpe05g00334 Cpe-Chr5:1858359 2.55E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g322 . . . . . . . . . . Cma02g01453 Cma15g01226 Car02g01219 Car15g01106 . . Cpe05g00334 . . . . . . . . . . . . . . Cone8ag0305 . Cone6ag0779 Cone9ag0784 . Csa05g00281 Chy09g01228 . . . . . . . . . . Cmo02g01488 Cmo15g01291 . . . . . Cpe13g00157 Bhi12g00260 . . . . . . Cla01g00265 Cam01g0272 Cec01g0265 Cco01g0280 Clacu01g0272 Cmu01g0260 Cre09g2248 Lsi09g00260 . . Cme09g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006093 0 1 1 0 0 1 1 1 1 1 1 1 2 1 1 1 1 4 3 1 1 1 1 1 1 1 1 4 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00334 Cpe_Chr05 FPKM 14.95927 18.073027 30.779343 31.263792 27.705906 29.76313 27.328276 47.587067 46.15905 50.685001