Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00338 ATGTGTCAAGGAAACTGTGAAAGATTTGAGAAAATGAACAAACAGAACAAGCCTAGTGTAAGCACTAAGCCATCAATATATTACTGGTGGAGACCAGATGAGAGGATATCATCTGAGCTGGCTGATTTTGTCCTTGAAAACGATACCCCCAACACTTGTTATGCCAAACACGGTAAAGATAGCAGTACTATAAATGAACCAAAGTCTTCTGAGATGTTGAGCACAGCTCAGTTCATTTCAATTTTTGGCCAAGTATTGAATCGTGCTAGTCGTCCTTTTACATTTTTTCAACCGAAGCAGATCTTAAATCAAGAAAATGATGATTCCAATGAGGTTGCGTTCAATAGTGTGGTTGAAGTTAATGGCAAATTAGTTGATATAAGGACCAATGACCAATGTTCTCTTATGGTGCAGTCTACTTTGGGCTTGTCTTGTTTGACAGTAACTCAGAAGATATCTTTGTTTGAACCTTGTAAATATCATTCCATGTCATCATTTTGGAGTCTACTATATGGTGGTAGAGACATGTCAGCTAAATCATGTAAAGGAAAAGGCTTTACTAGTGTACAAATCTTGCACGATATGAGGAAGAGATATAGATGGATGAACCATACAAGTCATACTGAAGCATCCTACGCTAAGAAAGTTGATAATAATGAACGCATGAAAGCCAATGCATTCAAGGCTAGAGGTGGTCTTAATGAAGCAGGGGGCTGCACGTCAGGAGATTCATGTTTTCTTGTTCATGAGTTTATCAATGAAATTTCAAAGAATGCTCTCATGTTCCAATCAATCAATTTATCATCGCTGTTCGTCCCGAAGTTGGAAATAAAAATGATGGAAAATGTTTATATGGCCTCACGTATCCTTACATTGGTTCAAGATAACAGGGCAGATGGCAGTATTTTAGAGATCCCAGATTCAGTTATTTTGGCAGCTCATTCATTACCTTCCAAGGACAGTGTATTAGACAATTTAGACAACAGGTGCAAGGCTAATAGCACTGAAGAACAGGAGAATAAAACCAAACAGTCCGACAAGCTCATTGTTGAAAAGGATTACTATAGAGAGGATTGCTCATTGACTCGTGAAAAATCTTGTTACAGTATTGCCAAGCAAGAACATGCCTTTGCGGGGGCATTAGCTGGTGTATTTGTCAGTCTTTGTCTACATCCTGTTGATACAATCAAAACAGTGGTTCAGTCTTATCATGCAGAACAGAAGTCTTTCAGTTACATTGGAAAATCAATTGTCTCTGATCGAGGTTTAAGTGGGCTTTATCGTGGAATCTCCACCAACATCGCGTCTTCAGCTCCGATATCTGCTGTTTACACTTTCACATATGAATCAGTTAAAGGAGCTTTGCTTCCACTTCTCCAAGAGGTGCTACTGGCTTTGCGATTGTATCAGAGTTGGGGGAGGGAGAAATGCAGGCAGAACTCTGCTTATGGATCCGTTTATGGAACCAATAGTGAGTATCGCTCTATTGTCCATTGTACGGCTGGTGGTTGTGCAAGTCTTGCTACATCTTTTATTTTTACCCCAAGTGAGCGTATAAAACAGCAGATGCAAGTTAGTTCACGCTACCATAACTGCTGGAATGCTTTTGTTGGTGTTGTTGCAAATGGTGGATTGCGAGGATTATATACTGGGTGGGGAGCTGTTCTTTGCAGAAACGTACCACACTCAATTATCAAGTTCTATACCTATGAAAGTTTGAAAGGACTGATGAAATCTAATGCTCAGCAAACTACCTCACAAACGTTAGTATGTGGAGGAGTAGCTGGATCTACTGCTGCTTTGTTTACCACTCCTTTTGATGTGTTCTATACCTATGAAAGTTTGAAAGGACTGATGAAATCTAATGCTCAGCAAACTACCTCACAAACGTTAGTATGTGGAGGAGTAGCTGGATCTACTGCTGCTTTGTTTACCACTCCTTTTGATGTGGTAAAAACGAGATTGCAAACACAGATTCCAGGATCTCTGAGCCCATATAAAAGTGTAATTCAAGCGCTCTATGAAATTGGCAAGAAAGAAGGTCTGAAAGGCCTCTATAGGGGCCTGACTCCAAGACTGATAATGTACATGTCTCAAGGTGCAATCTTCTTTTCCTCTTATGAATTTTTGAAGAGAATCTTTTCTCTTGAGGCGCCTCAACATGGGAAGACTCCAACACCAATCAGATGA 2190 39.95 MCQGNCERFEKMNKQNKPSVSTKPSIYYWWRPDERISSELADFVLENDTPNTCYAKHGKDSSTINEPKSSEMLSTAQFISIFGQVLNRASRPFTFFQPKQILNQENDDSNEVAFNSVVEVNGKLVDIRTNDQCSLMVQSTLGLSCLTVTQKISLFEPCKYHSMSSFWSLLYGGRDMSAKSCKGKGFTSVQILHDMRKRYRWMNHTSHTEASYAKKVDNNERMKANAFKARGGLNEAGGCTSGDSCFLVHEFINEISKNALMFQSINLSSLFVPKLEIKMMENVYMASRILTLVQDNRADGSILEIPDSVILAAHSLPSKDSVLDNLDNRCKANSTEEQENKTKQSDKLIVEKDYYREDCSLTREKSCYSIAKQEHAFAGALAGVFVSLCLHPVDTIKTVVQSYHAEQKSFSYIGKSIVSDRGLSGLYRGISTNIASSAPISAVYTFTYESVKGALLPLLQEVLLALRLYQSWGREKCRQNSAYGSVYGTNSEYRSIVHCTAGGCASLATSFIFTPSERIKQQMQVSSRYHNCWNAFVGVVANGGLRGLYTGWGAVLCRNVPHSIIKFYTYESLKGLMKSNAQQTTSQTLVCGGVAGSTAALFTTPFDVFYTYESLKGLMKSNAQQTTSQTLVCGGVAGSTAALFTTPFDVVKTRLQTQIPGSLSPYKSVIQALYEIGKKEGLKGLYRGLTPRLIMYMSQGAIFFSSYEFLKRIFSLEAPQHGKTPTPIR 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1882941 1890649 - Cp4.1LG05g03250.1 Cpe05g00338 469543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00338 729 ProSiteProfiles Solute carrier (Solcar) repeat profile. 370 454 IPR018108 -
Cpe05g00338 729 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 609 722 - -
Cpe05g00338 729 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 609 722 - -
Cpe05g00338 729 Gene3D Mitochondrial carrier domain 334 490 IPR023395 -
Cpe05g00338 729 Gene3D Mitochondrial carrier domain 491 610 IPR023395 -
Cpe05g00338 729 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 12 461 - -
Cpe05g00338 729 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 491 608 - -
Cpe05g00338 729 SUPERFAMILY Mitochondrial carrier 374 610 IPR023395 -
Cpe05g00338 729 Pfam Mitochondrial carrier protein 626 715 IPR018108 -
Cpe05g00338 729 Pfam Mitochondrial carrier protein 495 579 IPR018108 -
Cpe05g00338 729 Pfam Mitochondrial carrier protein 374 455 IPR018108 -
Cpe05g00338 729 Gene3D Mitochondrial carrier domain 611 728 IPR023395 -
Cpe05g00338 729 ProSiteProfiles Solute carrier (Solcar) repeat profile. 493 576 IPR018108 -
Cpe05g00338 729 ProSiteProfiles Solute carrier (Solcar) repeat profile. 625 713 IPR018108 -
Cpe05g00338 729 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 12 461 - -
Cpe05g00338 729 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 491 608 - -
Cpe05g00338 729 SUPERFAMILY Mitochondrial carrier 609 710 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00338 - - - csv:101216245 993.416
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02106 Cpe-Chr1:17815269 Cpe05g00338 Cpe-Chr5:1882941 1.49E-06 dispersed
Cpe05g00338 Cpe-Chr5:1882941 Cpe13g00699 Cpe-Chr13:6511488 1.44E-24 dispersed
Cpe05g00338 Cpe-Chr5:1882941 Cpe18g00704 Cpe-Chr18:6965984 3.98E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g321 . . . . . . . . . . Cma02g01450 . Car02g01217 . . . Cpe05g00338 . . . . . . . . . . . . . . Cone8ag0303 . . . . Csa05g00280 Chy09g01229 . . . . . Bpe08g01484 . . . . Cmo02g01486 . . . . . . . Bhi12g00262 . . . . . . Cla01g00261 Cam01g0267 Cec01g0259 Cco01g0274 Clacu01g0266 Cmu01g0255 Cre09g2252 Lsi09g00256 . . Cme09g01764
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006178 1 3 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 4 6 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00338 Cpe_Chr05 FPKM 9.843487 10.627631 43.785458 41.919502 40.766953 40.782612 34.443748 28.463318 28.25827 27.999168