Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00340 ATGGACCCAAAAGAAGTCAAGTCCGACTTGGTTTTGATTCTGGACTTTGGCTCGCAATACACCCATCTTATCACTCGCCGGATTCGGAGCCTCTCTGTTTTTTCTCTTTGTATTTCGGGGACTTCTCCGCTCAAGGCCATCACTGATCTCAATCCACAAGTCGTTATTCTCTCTGGTGGACCTCACTCTGTCCATGCTAGCGACTCGCCGAGTTTCGCTGCTGGGTTCGTCGAGTGGGCGGAGGCGAACGGGGTTTTTGTTTTGGGTATTTGTTATGGGCTTCAGTTGATTGTGCAGAGGTTGGGAGGTGTGGTGAAGGTTGGGGAGAAGCAGGAGTATGGGAGAATGGAGATTGTGGTGGAGAAGGCTAAAGGGTTGTTTGGGACTAAGAAGGTTGGGGACAGGCAAGCTGTTTGGATGAGCCATGGTGATGAGGTGGCGAAACTTCCTGAGGGGTTTGAAGTGGTGGCGAGGAGTCAACAAGGGTCCGTCGCGGCTGTGGAAAATCATTCAAAGAAGTTCTTTGGGTTACAGTATCATCCAGAGGTTACTCATTCACCAGAAGGAATGGAAACGTTGCGTTATTTTCTCTTTGATGTCTGTGGAATTACCGCTAGCTGGAAGATGGAGAATATACTAGATGAAGAAATTAAAGTAATCAAAGAAACTGTTGGTCCAGATGCTCACGTCATATGTGCATTATCAGGAGGTGTGGATTCAACCGTTGCTGCAACTCTTGTTCATAAGGCAATTGGGGAAAGGCTTCACTGTGTTTTTGTTGACAATGGTTTATTAAGGGGAAGATCTATCCCATGTACCTCTACAGAAGTAGAACTGCGAACCTCTCTCTACCGTTTTCCATCAATGGACCCAAAAGAAGTCAAGTCCGACTTGGTTTTGATTCTGGACTTTGGCTCGCAATACACCCATCTTATCACTCGCCGGATTCGGAGCCTCTCTGTTTTTTCTCTTTGTATTTCGGGGACTTCTCCGCTCAAGGCCATCACTGATCTCAATCCACAAGTCGTTATTCTCTCTGGTGGACCTCACTCTGTCCATGCTAGCGACTCGCCGAGTTTCGCTGCTGGGTTCGTCGAGTGGGCGGAGGCGAACGGGGTTTTTGTTTTGGGTATTTGTTATGGGCTTCAGTTGATTGTGCAGAGGTTGGGAGGTGTGGTGAAGGTTGGGGAGAAGCAGGAGTATGGGAGAATGGAGATTGTGGTGGAGAAGGCTAAAGGGTTGTTTGGGACTAAGAAGGTTGGGGACAGGCAAGCTGTTTGGATGAGCCATGGTGATGAGGTGGCGAAACTTCCTGAGGGGTTTGAAGTGGTGGCGAGGAGTCAACAAGGGTCCGTCGCGGCTGTGGAAAATCATTCAAAGAAGTTCTTTGGGTTACAGTATCATCCAGAGGTTACTCATTCACCAGAAGGAATGGAAACGTTGCGTTATTTTCTCTTTGATGTCTGTGGAATTACCGCTAGCTGGAAGATGGAGAATATACTAGATGAAGAAATTAAAGTAATCAAAGAAACTGTTGGTCCAGATGCTCACGTCATATGTGCATTATCAGGAGGTGTGGATTCAACCGTTGCTGCAACTCTTGTTCATAAGGCAATTGGGGAAAGGCTTCACTGTGTTTTTGTTGACAATGGTTTATTAAGGTATAAAGAACGAGAACGTGTTATGGAAACCTTTGAAAGCGATCTTCATTTGCCTGTTACTTGTGTTGATGCAGTTGATCATTTTCTTAGCAAACTTAAAGGTGTAGTAGATCCTGAGGCGAAAAGAAAAATAATTGGGAAAGAGTTTATTTCTATATTTGATTCATTTGGCCATGATTTGGAACTTAAAATTGGTAAGAAGCCTTCATACTTGGTCCAAGGCACATTGTATCCTGATGTAATTGAATCTTGCCCGCCACCTGGATCTGGAAGAAACCATTCCCACACGATCAAGAGTCATCATAACGTCGGAGGACTTCCCAAGGACATGAAACTGAAACTTATTGAGCCACTTAAGCTCCTCTTTAAGGACGAGGTACGCCAACTCGGGAGGATATTGAATGTTCCTGATGCGTTTCTAAAGCGCCACCCTTTCCCTGGGCCTGGTCTTGCTGTACGAGTGCTGGGCGATGTAACAGAAGGCAATGCATTGGAGGTTCTTCGCCAGGTTGATGAGATTTTTATTCAGTCAATCAAGGATGCTGGGCTGTATGATTCAATATGGCAAGCATTTGCAGTGTTTTTACCCATAAAATCAGTTGGAGTTCAGGGTGACCAAAGGACACATTCTCATGTTGTTGCTCTGAGAGCTGTTACAAGTCAAGATGGAATGACAGCAGATTGGAACGTTAAGTTAAAACCCGAAAAACAGAGGAAATTGACACATCTGTGTAGGTATAAAGAACGAGAACGTGTTATGGAAACCTTTGAAAGCGATCTTCATTTGCCTGTTACTTGTGTTGATGCAGTTGATCATTTTCTTAGCAAACTTAAAGGTGTAGTAGATCCTGAGGCGAAAAGAAAAATAATTGGGAAAGAGTTTATTTCTATATTTGATTCATTTGGCCATGATTTGGAACTTAAAATTGGTAAGAAGCCTTCATACTTGGTCCAAGGCACATTGTATCCTGATGTAATTGAATCTTGCCCGCCACCTGGATCTGGAAGAAACCATTCCCACACGATCAAGAGTCATCATAACGTCGGAGGACTTCCCAAGGACATGAAACTGAAACTTATTGAGCCACTTAAGCTCCTCTTTAAGGACGAGGTACGCCAACTCGGGAGGATATTGAATGTTCCTGATGCGTTTCTAAAGCGCCACCCTTTCCCTGGGCCTGGTCTTGCTGTACGAGTGCTGGGCGATGTAACAGAAGGCAATGCATTGGAGGTTCTTCGCCAGGTTGATGAGATTTTTATTCAGTCAATCAAGGATGCTGGGCTGTATGATTCAATATGGCAAGCATTTGCAGTGTTTTTACCCATAAAATCAGTTGGAGTTCAGGGTGACCAAAGGACACATTCTCATGTTGTTGCTCTGAGAGCTGTTACAAGTCAAGATGGAATGACAGCAGATTGGTTTAACTTTGAACATCAGTTCCTGGATAATGTGGCAAGAAAAATTTGCAATAGCGTTCGGGGCGTAAACAGGGTTGTTCAAGACATCACGTCGAAGCCTCCGTCAACAATCGAATGGGAATGA 3204 44.82 MDPKEVKSDLVLILDFGSQYTHLITRRIRSLSVFSLCISGTSPLKAITDLNPQVVILSGGPHSVHASDSPSFAAGFVEWAEANGVFVLGICYGLQLIVQRLGGVVKVGEKQEYGRMEIVVEKAKGLFGTKKVGDRQAVWMSHGDEVAKLPEGFEVVARSQQGSVAAVENHSKKFFGLQYHPEVTHSPEGMETLRYFLFDVCGITASWKMENILDEEIKVIKETVGPDAHVICALSGGVDSTVAATLVHKAIGERLHCVFVDNGLLRGRSIPCTSTEVELRTSLYRFPSMDPKEVKSDLVLILDFGSQYTHLITRRIRSLSVFSLCISGTSPLKAITDLNPQVVILSGGPHSVHASDSPSFAAGFVEWAEANGVFVLGICYGLQLIVQRLGGVVKVGEKQEYGRMEIVVEKAKGLFGTKKVGDRQAVWMSHGDEVAKLPEGFEVVARSQQGSVAAVENHSKKFFGLQYHPEVTHSPEGMETLRYFLFDVCGITASWKMENILDEEIKVIKETVGPDAHVICALSGGVDSTVAATLVHKAIGERLHCVFVDNGLLRYKERERVMETFESDLHLPVTCVDAVDHFLSKLKGVVDPEAKRKIIGKEFISIFDSFGHDLELKIGKKPSYLVQGTLYPDVIESCPPPGSGRNHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPDAFLKRHPFPGPGLAVRVLGDVTEGNALEVLRQVDEIFIQSIKDAGLYDSIWQAFAVFLPIKSVGVQGDQRTHSHVVALRAVTSQDGMTADWNVKLKPEKQRKLTHLCRYKERERVMETFESDLHLPVTCVDAVDHFLSKLKGVVDPEAKRKIIGKEFISIFDSFGHDLELKIGKKPSYLVQGTLYPDVIESCPPPGSGRNHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPDAFLKRHPFPGPGLAVRVLGDVTEGNALEVLRQVDEIFIQSIKDAGLYDSIWQAFAVFLPIKSVGVQGDQRTHSHVVALRAVTSQDGMTADWFNFEHQFLDNVARKICNSVRGVNRVVQDITSKPPSTIEWE 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1903575 1909566 - Cp4.1LG05g03260.1 Cpe05g00340 469545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00340 1067 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 484 715 - -
Cpe05g00340 1067 Gene3D - 292 492 IPR029062 -
Cpe05g00340 1067 Gene3D - 4 204 IPR029062 -
Cpe05g00340 1067 PANTHER GMP SYNTHASE-RELATED 290 783 - -
Cpe05g00340 1067 PANTHER GMP SYNTHASE-RELATED 2 268 - -
Cpe05g00340 1067 PANTHER GMP SYNTHASE-RELATED 797 1067 - -
Cpe05g00340 1067 CDD GATase1_GMP_Synthase 11 197 IPR004739 GO:0003922|GO:0005524|GO:0006177
Cpe05g00340 1067 ProSiteProfiles GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile. 207 266 IPR025777 GO:0003921|GO:0005524
Cpe05g00340 1067 CDD GMP_synthase_C 517 782 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Cpe05g00340 1067 Hamap GMP synthase [glutamine-hydrolyzing] [guaA]. 296 1067 IPR022955 GO:0003922|GO:0006177
Cpe05g00340 1067 SUPERFAMILY Class I glutamine amidotransferase-like 9 237 IPR029062 -
Cpe05g00340 1067 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 225 267 - -
Cpe05g00340 1067 TIGRFAM guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 11 203 IPR004739 GO:0003922|GO:0005524|GO:0006177
Cpe05g00340 1067 TIGRFAM guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 299 491 IPR004739 GO:0003922|GO:0005524|GO:0006177
Cpe05g00340 1067 Pfam Glutamine amidotransferase class-I 301 487 IPR017926 -
Cpe05g00340 1067 Pfam Glutamine amidotransferase class-I 13 199 IPR017926 -
Cpe05g00340 1067 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 797 960 - -
Cpe05g00340 1067 Gene3D - 947 1067 - -
Cpe05g00340 1067 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 298 494 - -
Cpe05g00340 1067 CDD GMP_synthase_C 797 1066 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Cpe05g00340 1067 Pfam GMP synthase C terminal domain 731 783 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Cpe05g00340 1067 Pfam GMP synthase C terminal domain 976 1066 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Cpe05g00340 1067 Gene3D HUPs 206 282 IPR014729 -
Cpe05g00340 1067 SUPERFAMILY GMP synthetase C-terminal dimerisation domain 701 783 - -
Cpe05g00340 1067 Gene3D HUPs 794 946 IPR014729 -
Cpe05g00340 1067 Gene3D HUPs 496 706 IPR014729 -
Cpe05g00340 1067 ProSiteProfiles GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile. 732 941 IPR025777 GO:0003921|GO:0005524
Cpe05g00340 1067 ProSiteProfiles GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile. 495 696 IPR025777 GO:0003921|GO:0005524
Cpe05g00340 1067 SUPERFAMILY Class I glutamine amidotransferase-like 297 525 IPR029062 -
Cpe05g00340 1067 SUPERFAMILY GMP synthetase C-terminal dimerisation domain 946 1067 - -
Cpe05g00340 1067 TIGRFAM guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 499 783 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Cpe05g00340 1067 TIGRFAM guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 797 1067 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Cpe05g00340 1067 CDD GATase1_GMP_Synthase 299 485 IPR004739 GO:0003922|GO:0005524|GO:0006177
Cpe05g00340 1067 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 10 206 - -
Cpe05g00340 1067 PANTHER GMP SYNTHASE (GLUTAMINE-HYDROLYZING), PUTATIVE / GLUTAMINE AMIDOTRANSFERASE, PUTATIVE-RELATED 290 783 - -
Cpe05g00340 1067 PANTHER GMP SYNTHASE (GLUTAMINE-HYDROLYZING), PUTATIVE / GLUTAMINE AMIDOTRANSFERASE, PUTATIVE-RELATED 2 268 - -
Cpe05g00340 1067 PANTHER GMP SYNTHASE (GLUTAMINE-HYDROLYZING), PUTATIVE / GLUTAMINE AMIDOTRANSFERASE, PUTATIVE-RELATED 797 1067 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00340 K01951 guaA, GMPS; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] - csv:101217911 947.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00385 Cpe-Chr15:5071412 Cpe05g00340 Cpe-Chr5:1903575 1.58E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g315 . . . . . . . . . . Cma02g01447 . Car02g01215 . . . Cpe05g00340 . . . . . . . . . . . . . . Cone8ag0300 . . . . Csa05g00277 Chy09g01232 . . . . . . . . . . Cmo02g01484 . . . . . . . Bhi12g00269 . . Lac11g2086 Hepe06g1540 . Lcy12g1646 Cla01g00258 Cam01g0265 Cec01g0256 Cco01g0271 Clacu01g0264 Cmu01g0253 Cre09g2256 Lsi09g00253 . . Cme09g01767
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009759 2 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00340 Cpe_Chr05 FPKM 15.41054 15.850579 14.722445 13.09051 46.657467 51.854645 44.573898 12.54345 12.607598 10.469313