Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00342 ATGGCTTCAACCTTCACTTTTCTTCCTTTTCCCCTCATTCTATCTCCCCGTCCTAGTATTCCATGTGTAAGACCTCAATTTCGCCGCCAATATTTTCCCACCATTCGAATTCTCCGACCCTCAGTTCCTTCCGCCATCGGGCCGGACGGAAAGTTCTATCCGAACCCGGCCGACGACGACCCTCCGGAAGCTCCGGAAGATGCCGGCCATGGAGTTTCGAAGTTTCAGCAGATATACCGCCAAGCTGCTCGTGCGAAAAAGATTCAGGAGGAGGATTTCAAGAAGCATCAGTCTACTTATCTGTCGGCCATTGCTGACGTCGAGGATGCTCCCGATAATGCTGAATATTTGAACTCGGAGAGCTCTGGAGATGATTTGTTCGGTGAAATTGACAAAGCTATTGCTATGAAGCGGAAGGAATTCGTGAAGCAGGGACTTCTCAAGCCTAACCCAAAGAAAGAAAAGGCGATTGATAAAGATATTCTTGAGGGCATTGATGAGTTGGAGACCGAGGAGGTCGTGGACTTGGAGGAAATTAACGAGCTCCAGGGGCTTACGGAGATTTCGGAGGACGAGAATGAGGACAAGGACGGGGATGAAGAGGGGCCGGGGAATTTGGATGACGATGCAAGGGAATTACATGGTTCGGATGAACTATCATCTTTTAATTCTTTTGATGTGGATTTTGATAGCTATGGAAAAGTTAAGACTAGAATTGTGGAACCCAAGTTCAAAATGACTTTAGCTGAGCTCTTGGATGAAAGTAAGGTCGTTCCAGTTTCTGTTTTTGGCAATTTAGAGATAGAAATAACTGGCATTCAACATGACTCAAGAATGGTTAACGCGGGTTACTTGTTTGTATGTTGTGTTGGGAGGGAAACTGATGGACATTTGTATTTAACTGAGGCGGATAAGAGGGGTGCAGTGGCTGTGGTGGCTAGCAAGGAGATAGATATAGAAGAAACTTTGGGCTGTAAAGCTTTAGTTATGGTGGAGGATACTAATTCAGTTCTTCCTGCATTGGCTGCTTCTTTTTACATGAACCCGTCAAAGAATATGGCTGTGATAGGAGTAACAGGGACAGATGGTAAAACCAGCACTTCCTACTTGATAAAGGGGATGTATGAGGCAATGGGGTTGAGAACTGGGTTGTTAGGTACAGTGGCCTATTATTTACATGGGGACAATAAGTTGGAGGCGCCTAGTACAACCCCGGATGCTATTTTGGTCCAAAACTTAATGGCAAAGATGCTTCATAATGGAACTGAAGCGGTTGTAATGGAGGTTTCAACCGCTGAACTTGCTCGTGGCAGGTGTGATGAAGTTGACTTTGATATAGCGGTTTTCACAAATTTGACTCCGGAGTCAAATTTGGATTTTCAAGAGTCTGAAGAGGAGTATAGGGATGCCAAAGCCAAGCTATTTAGAAGGATGGTGGATCCAGATCGACATCGAAAAGTTGTTAACATTGACGATCCGAATGCACCATTCTTCATAGGTCAAGGAAATCCAGACGTGCCAGTTGTTACCTTTGCCATGGAAAACAAAAATGCTGCTGTCCATCCCCTGAAGTATGAATTGTCACTATTTGAGACACAGGTTTTGGTTCACACTCCCCAGGGGATATTGGAGATATCATCAGGGTTGCTTGGAAAGCATAACATATACAATATTCTTGCAGCAGTGTCAGTAGGGATTGCAGTGGGAGCACCATTAGAGGATATTGTTAGAGGTATTGAAGAGGTTGATGCTGTTCCAGGGAGATTTGAGCTGATTGATGAAGAGCAGGCATTTGGTGTAATTGTTGATCGTGCTCAGACTCCAGATGGCCTGTCCCGACTGCTTGATTCTGTGAGGGAGCTTGGACCCAGGAGGATTATCACTGTTTTTGGATGCTGTGGCGAGCATGACAGGGGGAAAAGACCCATGATGACAAAGATTGCAACCGATAAAAGTGACATTACAATTCTGACATCAGATAATCCAAGGAATGAAGATCCATTGGACATTTTGGATGATATGTTGGCTGGTATAGGCTGGACTATGCAGGATTACTTGAAGCATGGAGAAAATGATTACTATCCGCCTCTTCCAAATGGTCATAGGATTTTCTTGCATGATATTAGACGTGTGGCTGTACGTGCTGGTGTTGCAATGGGTGAGGAAGGCGACGTGGTTGTGGTTGCTGGCAAGGGCCATGAAACATATCAAATTGAAGGTGATAAAAAAGACTTTTTTGATGATAGAGAAGAATGCAGAGAAGCATTGCAATATGTTGATGAACTTCACCAAGCTGGAATTGACACAAGTGAATTTCCATGGCGATGCGTGCCCGAGTTGGAGATGGAAGTGAAGAATCCGAATCAGTGCTCGTAA 2376 44.7 MASTFTFLPFPLILSPRPSIPCVRPQFRRQYFPTIRILRPSVPSAIGPDGKFYPNPADDDPPEAPEDAGHGVSKFQQIYRQAARAKKIQEEDFKKHQSTYLSAIADVEDAPDNAEYLNSESSGDDLFGEIDKAIAMKRKEFVKQGLLKPNPKKEKAIDKDILEGIDELETEEVVDLEEINELQGLTEISEDENEDKDGDEEGPGNLDDDARELHGSDELSSFNSFDVDFDSYGKVKTRIVEPKFKMTLAELLDESKVVPVSVFGNLEIEITGIQHDSRMVNAGYLFVCCVGRETDGHLYLTEADKRGAVAVVASKEIDIEETLGCKALVMVEDTNSVLPALAASFYMNPSKNMAVIGVTGTDGKTSTSYLIKGMYEAMGLRTGLLGTVAYYLHGDNKLEAPSTTPDAILVQNLMAKMLHNGTEAVVMEVSTAELARGRCDEVDFDIAVFTNLTPESNLDFQESEEEYRDAKAKLFRRMVDPDRHRKVVNIDDPNAPFFIGQGNPDVPVVTFAMENKNAAVHPLKYELSLFETQVLVHTPQGILEISSGLLGKHNIYNILAAVSVGIAVGAPLEDIVRGIEEVDAVPGRFELIDEEQAFGVIVDRAQTPDGLSRLLDSVRELGPRRIITVFGCCGEHDRGKRPMMTKIATDKSDITILTSDNPRNEDPLDILDDMLAGIGWTMQDYLKHGENDYYPPLPNGHRIFLHDIRRVAVRAGVAMGEEGDVVVVAGKGHETYQIEGDKKDFFDDREECREALQYVDELHQAGIDTSEFPWRCVPELEMEVKNPNQCS 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1919338 1924748 + Cp4.1LG05g03350.1 Cpe05g00342 469547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00342 791 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC 224 770 - -
Cpe05g00342 791 Gene3D - 247 347 - -
Cpe05g00342 791 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 585 757 IPR036615 GO:0009058|GO:0016881
Cpe05g00342 791 SUPERFAMILY MurD-like peptide ligases, catalytic domain 349 582 IPR036565 GO:0005524|GO:0009058
Cpe05g00342 791 MobiDBLite consensus disorder prediction 46 71 - -
Cpe05g00342 791 MobiDBLite consensus disorder prediction 181 206 - -
Cpe05g00342 791 Gene3D - 590 767 IPR036615 GO:0009058|GO:0016881
Cpe05g00342 791 TIGRFAM murE: UDP-N-acetylmuramyl-tripeptide synthetase 268 757 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Cpe05g00342 791 Pfam Mur ligase family, catalytic domain 269 346 IPR000713 GO:0009058|GO:0016881
Cpe05g00342 791 MobiDBLite consensus disorder prediction 181 213 - -
Cpe05g00342 791 Pfam Mur ligase family, glutamate ligase domain 585 668 IPR004101 GO:0009058|GO:0016881
Cpe05g00342 791 SUPERFAMILY MurE/MurF N-terminal domain 263 346 IPR035911 -
Cpe05g00342 791 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 246 756 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Cpe05g00342 791 Pfam Mur ligase middle domain 358 564 IPR013221 GO:0005524|GO:0009058|GO:0016881
Cpe05g00342 791 Gene3D - 349 588 IPR036565 GO:0005524|GO:0009058
Cpe05g00342 791 PANTHER MUR LIGASE FAMILY MEMBER 224 770 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00342 - - - cmos:111459690 1495.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g313 . . . . . . . Bma14g00701 . . Cma02g01444 . Car02g01212 . . . Cpe05g00342 . . . . . . . . . . . . . . Cone8ag0299 Cone12ag0305 . . . Csa05g00273 Chy09g01235 . Blo03g00340 . Bda07g00481 . . . . . . Cmo02g01481 . . . . . . . Bhi12g00272 . . . Hepe06g1538 . Lcy12g1641 Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Lsi09g00249 . . Cme09g01769
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006982 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00342 Cpe_Chr05 FPKM 158.267319 164.987717 228.91864 220.012268 189.894958 228.980057 169.710373 347.962311 378.020111 337.456635