Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00345 ATGCCGCCTCCTTTTTCTGGTTCAACGTGTTCTTCTTCTGATTTGATTCACCCGCCATTAAACCCTGAATCTAATATCGTCGCCATTAACGTTGGTGGCCATTTCTTTCAAACTACCAAGCAAACCCTAGCCCTAGCCGGTTCCAAATCTCTGTTATCAACGCTCTTCGATTCATCGCAATCCGATGTGCCGTTTATCGATCGAGATCCCGATCTCTTTTCTCTCATACTTTCGCTTCTCAGAACGGGTTACCTTCCGTCTAAAGCCAAGGCGTTTGATCTGCAAGACCTAATTTCGGAGTCGCAGTTCTATGGAATCGAATCGCTTTTGATCAATTCTTTGTCTAATCCTTCCCAATTTGAAGCTTTCAACCTTGAGAAATCGCTGATTTTGCCCCTCAATGGCCGAGATCCTCCGGCGGCGATTACGACGACACCGTTTGGATCGGTCCACGTCGCTCACGGCGGCAAGATCACCTCCTTTGATTGGTCGCTTCAGAGGAAGACGACGATTCTGACGCAATTCTCAGCGATCGATTCCCTTCTAGCGTTGTCGCCTTCGGTGGCCGCTGCCGGTGCCACCGATTTCTCTGGACTGCAAGTCCTCGATCTCGATACCGGCCACGTGAGAACGATTCTTAATTGGGAGAACGTGACTCGATCAAGTTCCACCGTGCAAGCCATTGGAGCCTCCTCTCAATTTCTCTTCACCAGCTTCGAATCAGGCAGAAGAAACTCAAATTCCATTATGATATACGATTTACAAACCTTCAGTCCCGTTAATGAAATTGGCCACAATGAGATCTTCGGAGCGGATATCGACTCAGCAATCCCAGCCACAATGTTGAATTGGGTTGCAGGTTATAATTTGTTAATGGCTTCTGGGTCTCACAGTGGACCTTCTGGTGTACAGGGCAACATCAAATTTTGGGACATTAGAACAGGAAACATAGCTTGGGAGCTGAAGGAGAAAGTGGACTGTTTCTCAGACATGACAATATCTGAGAACCTGTCTGCCATTTTCAAGATTGGTGTGAGCTCTGGTGAAGTTTACAGTGCAGATTTGAGGAAGCTTGGAGATGGGAATCCATGGATCCTCCTAGGGGACAGGATGAAGGTGGTGAATGGGAAGAAGGCAGGGGCTGGGGGGAAGATTGAGAGTTATGGAAATCAGGTGTTTTGTAGCAGAGAAGGAGGGATCATAGAGTTGTGGTCAGAAGTAGCAGTTGAAAATGGAGGAAGCAAGGAAGGAGGATTAAGGTTAGAGGAGAGAGTTTTTAGGAAGAATGTGATGGGGAGAGTGAAGGATTTGGGAGGTGGGAGAGTGACCAAATTGGCATTTGGAGGGAATAAGATGTTCGTGACAAGAAAAGACCAGCAATCTGTGGAGGTTTGGCAGAGTACAAATAAGGTATTTTGA 1419 47.0 MPPPFSGSTCSSSDLIHPPLNPESNIVAINVGGHFFQTTKQTLALAGSKSLLSTLFDSSQSDVPFIDRDPDLFSLILSLLRTGYLPSKAKAFDLQDLISESQFYGIESLLINSLSNPSQFEAFNLEKSLILPLNGRDPPAAITTTPFGSVHVAHGGKITSFDWSLQRKTTILTQFSAIDSLLALSPSVAAAGATDFSGLQVLDLDTGHVRTILNWENVTRSSSTVQAIGASSQFLFTSFESGRRNSNSIMIYDLQTFSPVNEIGHNEIFGADIDSAIPATMLNWVAGYNLLMASGSHSGPSGVQGNIKFWDIRTGNIAWELKEKVDCFSDMTISENLSAIFKIGVSSGEVYSADLRKLGDGNPWILLGDRMKVVNGKKAGAGGKIESYGNQVFCSREGGIIELWSEVAVENGGSKEGGLRLEERVFRKNVMGRVKDLGGGRVTKLAFGGNKMFVTRKDQQSVEVWQSTNKVF 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1932688 1934106 - Cp4.1LG05g03320.1 Cpe05g00345 469550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00345 472 Pfam BTB/POZ domain 27 113 IPR003131 GO:0051260
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00345 - - - csv:101216493 797.349
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01250 Cpe-Chr4:10432636 Cpe05g00345 Cpe-Chr5:1932688 5.71E-19 dispersed
Cpe05g00345 Cpe-Chr5:1932688 Cpe10g00951 Cpe-Chr10:5345419 1.38E-69 dispersed
Cpe05g00345 Cpe-Chr5:1932688 Cpe18g00564 Cpe-Chr18:6162131 2.51E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g304 . . . . . . . Bma14g00702 . . Cma02g01442 . Car02g01209 . . . Cpe05g00345 . . . . . . . . . . . . . . Cone8ag0294 Cone12ag0300 . . . Csa05g00270 Chy09g01239 . Blo03g00341 . Bda07g00482 . . . . . . Cmo02g01478 . . . . . . . Bhi12g00278 . . Lac11g2076 Hepe06g1534 . Lcy12g1637 Cla01g00253 Cam01g0259 Cec01g0251 Cco01g0264 Clacu01g0257 Cmu01g0246 Cre09g2263 Lsi09g00244 . . Cme09g01773
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010340 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00345 Cpe_Chr05 FPKM 15.76338 15.985349 25.690207 25.337673 12.957016 16.455826 15.599513 19.461838 19.179737 23.226179