Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00346 ATGGATGCACCTAAAGAGATATTTTTGAAAGATTACAAGATGCCTGATTACTATTTCGACACGGTGGATTTGAAATTTTTGTTGGGTGAGGAGAAGACAATCGTCAGTTCAAGAATAACAGTCTTCCCTAGAGTTGAAGGATCCAAATTTCCTCTTGTTTTGGATGGGGTTGATATGAAGTTGATTTCGATTAAGGTCAACAGCGAGGACCTCGAGGAGGCAGATTACGTTCTGGACTCCCGCCATTTGACGATCCTATCACCGCCAACTGGTTCTTTTACCTTGGAAATTGTTAATGAGATATATCCTCAGAACAACACTTCTTTAAAGGGACTCTATAAATCAACTGGAAATTTCTCCACACAATGTGAAGCTGAAGGTTTTCGGAAGATCACATTTTACCAGGACCGTCCTGATATAATGGCGAAGTACACATGTCGCATAGAAGCCGATAAGTCATTATACCCGGTGCTACTGTCTAATGGGAATCTTATAGATCAGGGTGATCTAGAGGGTGGAAAACATTTTGCCCTCTGGGAGGATCCCTTTAAGAAACCTTGCTACTTGTTTGCTTTAGTAGCTGGCAAGTTTGTAAGCAGAGACGATGTTTTTATTACTCGTTCAGGTAGGAAAATCTCCTTGAAGATATGGACCCCGGCTGAAGACGTACCCAAGACCGAGCATGCCATGTATTCTTTGAAGGCAGCTATGAAATGGGATGAAGATGTTTTTGGACTAGAATATGATCTCGATCTCTTCAATGTTGTGGCCGTTCCAGATTTCAACATGGGAGCCATGGAAAACAAGAGTTTGAATATTTTCAATTCACAACTTGTCTTGGCATCTCCAGAAACTGCTTCTGATTCCGACTATGCTGCCATATTAGGAGTGATTGGCCATGAGTATTTCCACAACTGGACTGGCAACAGGGTGACATGCCGTGATTGGTTCCAGCTGAGCCTGAAGGAAGGTCTTACGGTGTTCCGTGATCAGGAATTTTCATCCGACATGGGAAGTCGTGCTGTAAAGCGAATTTCTGACGTTTCAAAACTCAGAAACTATCAGTTTCCACAGGATGCTGGTCCCATGGCTCATCCTGTTCGACCACATTCCTATATCAAGATGGACAATTTTTACACAGGAAAGTGTTGTTCTCTATGGGTTTGCTCAAAATTTGAGCTATTTGTCTATGAAAAGGGTGCTGAAGTCGTGAGGATGTACAAGACCTTATTGGGAAGTCAAGGATTTAGAAAAGGCATGGATCTTTACTTCAAGAGGCATGATGGCCAAGCTGTTACCTGTGAAGATTTCTACGCCGCAATGCGGGATGCGAATAATTCCGATTTTGCTAACTTCTTACTATGGTACTCTCAAGCTGGGACCCCTCGAGTCAAAGTTACATCATCTTACAATTCCGATGGTCGTACTTTTACTCTGAAGTTCAGCCAAGATGTCCCACCAACTCCTGGGCAGCCAAATAAAGAGCCAATGTTTATACCTGTTGCTCTTGGTCTGCTAGTCTCAGCCGGCAACGATTTGCCTCTGTCCTCTATATATCATGATGGGGTGTTGCAATCTATAGCTGAAAATGATCGGCCAGTCTACCAAACAGTCCTCAGGCTGACCAAGAAAGAAGAAGAGATCGTCTTCTCTGACATACCCGAGCGACCAGTTCCATCTTTGTTTAGGGGCTACAGTGCTCCTATCCGTCTCGAAACAGATCTAAATGACGATGATCTGTTTTTCCTTCTTGCCCATGATTCTGATGAGTTCAACCGTTGGGAGGCTGGACAAGTGTTAGCACGGAAACTGATGCTCCAATTGGTGGCCGATCACCAACTAAATAAACCATTGGTTCTTAATTCGAAGTTTGTGGAGGGTCTGAGATCCATACTTTCTGACTCGAGCTTGGATAAAGAATTCATTGCGAAAGCTATAACTCTCCCCGGTGCAGGAGAAATAATGGACATGATGGCGGTGGCAGATCCCGATGCTGTTCATGCCGTTCGAACTTTCATCAGGAAGCAACTGGCCAATGCATTGAAAGCAGAGCTTCTCACTGCAGTAGAAAACAACAGGAGTTCAGAAGCATATGTGTTCAACCATCCTGAAATGGCGAGGCGTGCTTTGAAGAATATTTCTCTCGCATATCTTGCATTAGTTGAGGATGCAGAGATTGCCAATCTTGTGCTTGATGAGTATAAGAACGCCTCGAATATGACCGACCAATTTGCAGCTTTGGTGGCTCTAGACCAGAAGCCAGGTGAAACTCGTGACGAGGTTCTCGCCGACTTCTACACCAAGTGGCAGCACGACTATTTGGTTGTCAACAAATGGTTTGCTCTTCAAGCCATGTCAGACATTCCTGGCAATCTTGTGAATGTTCAGAACCTCCTAAATCATCCAGCATTCGACATTCGAAATCCAAACAACGTATATTCTTTGATTGGAGGTTTCTGTGGATCCATCGTCAACTTGCACGCGAAGGACGGATCTGGCTATAAATTCTTGGGAGAAGCTGTCATGCAACTAGATAAAATTAATCCCCAGGTGGCCTCTGGAATGGTCTCTGTCTTCACGAAATGGAAGCGTTACGACGAACACCGACAAAAGCTTGCCAAGGAACAACTGGAGAAGATACTGTCTGTGAATGGACTGTCTGAAAATGTGTTTGAAATTGCATCAAAAAGCTTAGCAGCAGCTTGA 2706 43.98 MDAPKEIFLKDYKMPDYYFDTVDLKFLLGEEKTIVSSRITVFPRVEGSKFPLVLDGVDMKLISIKVNSEDLEEADYVLDSRHLTILSPPTGSFTLEIVNEIYPQNNTSLKGLYKSTGNFSTQCEAEGFRKITFYQDRPDIMAKYTCRIEADKSLYPVLLSNGNLIDQGDLEGGKHFALWEDPFKKPCYLFALVAGKFVSRDDVFITRSGRKISLKIWTPAEDVPKTEHAMYSLKAAMKWDEDVFGLEYDLDLFNVVAVPDFNMGAMENKSLNIFNSQLVLASPETASDSDYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRAVKRISDVSKLRNYQFPQDAGPMAHPVRPHSYIKMDNFYTGKCCSLWVCSKFELFVYEKGAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFYAAMRDANNSDFANFLLWYSQAGTPRVKVTSSYNSDGRTFTLKFSQDVPPTPGQPNKEPMFIPVALGLLVSAGNDLPLSSIYHDGVLQSIAENDRPVYQTVLRLTKKEEEIVFSDIPERPVPSLFRGYSAPIRLETDLNDDDLFFLLAHDSDEFNRWEAGQVLARKLMLQLVADHQLNKPLVLNSKFVEGLRSILSDSSLDKEFIAKAITLPGAGEIMDMMAVADPDAVHAVRTFIRKQLANALKAELLTAVENNRSSEAYVFNHPEMARRALKNISLAYLALVEDAEIANLVLDEYKNASNMTDQFAALVALDQKPGETRDEVLADFYTKWQHDYLVVNKWFALQAMSDIPGNLVNVQNLLNHPAFDIRNPNNVYSLIGGFCGSIVNLHAKDGSGYKFLGEAVMQLDKINPQVASGMVSVFTKWKRYDEHRQKLAKEQLEKILSVNGLSENVFEIASKSLAAA 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1934983 1941587 - Cp4.1LG05g03290.1 Cpe05g00346 469551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00346 901 Pfam Domain of unknown function (DUF3458_C) ARM repeats 577 899 IPR024601 -
Cpe05g00346 901 PANTHER BNAC06G01820D PROTEIN 1 900 - -
Cpe05g00346 901 Pfam Peptidase family M1 domain 231 452 IPR014782 GO:0008237|GO:0008270
Cpe05g00346 901 TIGRFAM pepN_proteo: aminopeptidase N 11 898 IPR012779 GO:0008270
Cpe05g00346 901 Gene3D - 460 573 IPR038438 -
Cpe05g00346 901 Gene3D - 576 899 IPR037144 -
Cpe05g00346 901 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 6 195 IPR042097 -
Cpe05g00346 901 CDD M1_APN 11 457 - -
Cpe05g00346 901 Gene3D Neutral Protease Domain 2 283 459 IPR027268 -
Cpe05g00346 901 Gene3D - 199 282 - -
Cpe05g00346 901 PRINTS Membrane alanyl dipeptidase (M1) family signature 179 194 IPR001930 GO:0006508
Cpe05g00346 901 PRINTS Membrane alanyl dipeptidase (M1) family signature 297 312 IPR001930 GO:0006508
Cpe05g00346 901 PRINTS Membrane alanyl dipeptidase (M1) family signature 261 271 IPR001930 GO:0006508
Cpe05g00346 901 PRINTS Membrane alanyl dipeptidase (M1) family signature 316 328 IPR001930 GO:0006508
Cpe05g00346 901 Gene3D tricorn interacting facor f3 domain 14 197 IPR042097 -
Cpe05g00346 901 Pfam Domain of unknown function (DUF3458) Ig-like fold 460 574 IPR035414 -
Cpe05g00346 901 Pfam Peptidase M1 N-terminal domain 32 189 IPR045357 -
Cpe05g00346 901 PANTHER - 1 900 IPR012779 GO:0008270
Cpe05g00346 901 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 207 466 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00346 K01256 pepN; aminopeptidase N [EC:3.4.11.2] - jre:109014484 1508.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00346 Cpe13g00149 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00346 Cpe-Chr5:1934983 Cpe13g00825 Cpe-Chr13:7339602 2.57E-09 dispersed
Cpe02g00276 Cpe-Chr2:1436161 Cpe05g00346 Cpe-Chr5:1934983 5.54E-25 transposed
Cpe03g01061 Cpe-Chr3:8777581 Cpe05g00346 Cpe-Chr5:1934983 4.05E-26 transposed
Cpe13g00149 Cpe-Chr13:1083150 Cpe05g00346 Cpe-Chr5:1934983 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g302 . . . . . . Bma07g01666 . . . Cma02g01441 . Car02g01208 . . . Cpe05g00346 . . . . . . . . . . . . . . Cone8ag0292 Cone12ag0298 . . . Csa05g00269 Chy09g01240 . . . . Bda09g00031 . . . . . Cmo02g01477 Cmo15g01300 . . . . . Cpe13g00149 Bhi12g00279 . . Lac11g2075 Hepe06g1533 . Lcy12g1636 Cla01g00252 Cam01g0258 Cec01g0250 Cco01g0263 Clacu01g0256 Cmu01g0245 Cre09g2264 Lsi09g00243 . . Cme09g01774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00346 Cpe_Chr05 FPKM 7.238622 7.661552 1.772922 1.132957 1.502198 1.958581 1.43645 1.70968 1.237715 0.897776