Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00353 ATGGCTCTGCCCGCATCCACAACCACAACTACCACCAACGCTACTTCTACTAATTCCCTTTCTTCTTCTTCTTCTTCTCACAACAAACCCACTAAGCTTAAGCGACGGAAGTGCCGGGATATCACTGTTTCGGCTAAATCCGACTCGTTTTCCTCTACTTCTTCTAATTCCTCTTCTGGGTCTCACGTTTTTTCCAATCGAAAGCTTGATCATCCTCCTGTGATTGTTTCTTCGGAGAATTCCTGGTGTTGTCCCGCTACAAAACCCTCTGTAACCCCTGCGGTTCTTCCTCCTCCTCCGCCACCGCCGCCGTTTCCCCCCTCGAAATCTCGTCGGGGGGTTGTTTCTCCGACACCCACTAACGGGAATCGAGCATCGGATTCGGTTGTCTCTCCGTCCGATTCGCCGTCTACTTTTCGCATACGGTTTTCTCCGGGTAGTTTTTCGCCGGTTATGGACTTCACTACGTCTTCTTCCGCCAACGCCGCGGTAGCGGCGGGGTTTAATGGCCACTCTGGATCGAACCACGACTCTTTCCCTTCGAGCTTCTCGAAGTTCAACTCTGCTCTCACCGCTGGGCTATTGAACCCAATGTCGCCGCCGCCATCGACTGATAAAACCCGATCGAGTCCGACCCTTTTTGAAATGATGGCGAGCGAGCCTGATATTCACCCTAGAACTTCTCAGATCCCTTCTCATAGTGCACCTGTTTCGGTTCATAAGAACCAAATTCCTATTCAGGACAAGCAGGCCGTGATGATGCAGAGGATTTCTGAACTTTTGGGATCTCGGAGCCCTGGAAATCAGTTCAATGACGCCTCTAGCAGTGATATCAAACTCACATTGAGCTCTAGAGATGGGATTAGTGTTTCAATGAACGTTCACCGGCAAATTCTTGTCGCTCACAGTCGGTTTTTCGCTTTGAAGCTCTCGGAACGATGGGCGAAACAACAGAGGTCGCCGTCGCCATACATTGTAGAGATTGCTGACTGTGACGATGTTGAAGTGTATATTGAGACCTTGAAACTGATGTATTGTAGAGATCTGAGGAAGAAGCTGATGAAGGAAGATGTTCCCAGAGTTCTTGGAGTTCTAAAGGTTTCAGCTGCCATCGGGTTCGATGCAGGCGTCTTGTCGTGTTTGGAGTACTTGGAAGCAGCTCCATGGGCTGAGGATGAAGAAGAGAAAGTGGCATCACTCTTATCTGAGCTTCACCTTGAAGGTGTTGCAGCAGGGGAAGTTCTTAAGAGGGTCTCAATTGAAGTTACTAATGGACCTGAAGATGGTAATGACAATGAAGAAGTTCTGCTAAAGCTTCTACATGTCGTTCTGGAAGGAAAAGACGAGAAGGCTAGGCGCGAGATGAAAGGATTAGTCTCGAAGATGCTTCGTGAGAGTTCGTCGCAGAACGACCTTAGAAAAGAATCCTTGTATTCGGCTTGTGATGGTTGCCTGCAGTTGCTTCGCCATCACTTTATGAGAGCGGTAGGGGACTTTCAGGGTGTTGGGGAGATTGCCAAGCAGGCTGATAATCTGCATTGGATTTTAGATATCTTGATTGACAGACAGATAGCTGAAGATTTTTTGAAAATCTGGGCTTCTCAATCTGAATTGGCAGCTGCACACTCTAAGGTGCCTGCTGTCCACAGGTTCGAAATCAGCCGAGTAACTGCTCGGTTATTCGTTGGCATTGGCAAAGGTCAACTTCTGGCTCCTAAAGATGTGAGATATCAGCTTTTGCAGACATGGTTGGTGCCATTCTATGACGATTTTGGTTGGATGAGAAGAGCGTCGAGAGGCCTCGATCGCCACTTGATCGAGGATGGCCTTAGCAATACAATTCTCACTCTACCTTTAGCTTGGCAACAAGACATATTACTAGCTTGGTTCAATCGATTCATGAATTCAGGTGAAGATTGCCCAAATATACAACGCGGGTTCGAAGTTTGGTGGAGAAGGGCATTTTGGAGACGTAACGGTGAACAGGAGCGCCCTCGACCGATACGAATTGCCACCCCAACGTCAGAGAATTCATGA 2037 48.21 MALPASTTTTTTNATSTNSLSSSSSSHNKPTKLKRRKCRDITVSAKSDSFSSTSSNSSSGSHVFSNRKLDHPPVIVSSENSWCCPATKPSVTPAVLPPPPPPPPFPPSKSRRGVVSPTPTNGNRASDSVVSPSDSPSTFRIRFSPGSFSPVMDFTTSSSANAAVAAGFNGHSGSNHDSFPSSFSKFNSALTAGLLNPMSPPPSTDKTRSSPTLFEMMASEPDIHPRTSQIPSHSAPVSVHKNQIPIQDKQAVMMQRISELLGSRSPGNQFNDASSSDIKLTLSSRDGISVSMNVHRQILVAHSRFFALKLSERWAKQQRSPSPYIVEIADCDDVEVYIETLKLMYCRDLRKKLMKEDVPRVLGVLKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLSELHLEGVAAGEVLKRVSIEVTNGPEDGNDNEEVLLKLLHVVLEGKDEKARREMKGLVSKMLRESSSQNDLRKESLYSACDGCLQLLRHHFMRAVGDFQGVGEIAKQADNLHWILDILIDRQIAEDFLKIWASQSELAAAHSKVPAVHRFEISRVTARLFVGIGKGQLLAPKDVRYQLLQTWLVPFYDDFGWMRRASRGLDRHLIEDGLSNTILTLPLAWQQDILLAWFNRFMNSGEDCPNIQRGFEVWWRRAFWRRNGEQERPRPIRIATPTSENS 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1974990 1979782 + Cp4.1LG05g03180.1 Cpe05g00353 469558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00353 678 MobiDBLite consensus disorder prediction 91 110 - -
Cpe05g00353 678 MobiDBLite consensus disorder prediction 44 65 - -
Cpe05g00353 678 MobiDBLite consensus disorder prediction 91 137 - -
Cpe05g00353 678 MobiDBLite consensus disorder prediction 1 68 - -
Cpe05g00353 678 MobiDBLite consensus disorder prediction 113 137 - -
Cpe05g00353 678 ProSiteProfiles BTB domain profile. 276 353 IPR000210 GO:0005515
Cpe05g00353 678 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 31 676 IPR038920 -
Cpe05g00353 678 MobiDBLite consensus disorder prediction 1 28 - -
Cpe05g00353 678 Gene3D Potassium Channel Kv1.1; Chain A 243 387 IPR011333 -
Cpe05g00353 678 PANTHER OSJNBA0011J08.25 PROTEIN 31 676 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00353 - - - cmax:111491042 1244.57
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00353 Cpe13g00141 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00122 Cpe-Chr4:1105297 Cpe05g00353 Cpe-Chr5:1974990 9.71E-25 dispersed
Cpe05g00353 Cpe-Chr5:1974990 Cpe10g00395 Cpe-Chr10:2316311 2.32E-115 dispersed
Cpe19g00526 Cpe-Chr19:4469018 Cpe05g00353 Cpe-Chr5:1974990 2.43E-66 transposed
Cpe13g00141 Cpe-Chr13:1016204 Cpe05g00353 Cpe-Chr5:1974990 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g22 . . . . . . . Bma14g00603 . . Cma02g01433 Cma15g01243 Car02g01202 Car15g01121 . . Cpe05g00353 . . . . . . . . . . . . . . Cone8ag0286 Cone12ag0291 . . . Csa05g00259 Chy09g01248 . . . . . . Bpe11g00664 . . . Cmo02g01468 Cmo15g01309 . . . . . Cpe13g00141 Bhi12g00292 . . Lac11g2066 Hepe06g1523 . . Cla01g00244 Cam01g0248 Cec01g0241 Cco01g0254 Clacu01g0246 Cmu01g0236 Cre09g2272 Lsi09g00234 . . Cme09g01783
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004050 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00353 Cpe_Chr05 FPKM 22.306383 23.855656 21.49016 23.805513 42.30727 42.713402 42.221523 23.852922 22.445255 20.417213