Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00354 ATGGCCACTCTTATCGCGGGACTATCTCCGTCTTCCTCCAAATTCCATGTCTTCAACTCCAACATTTCAATCCGCTGTTGCGGAGACCAGAGCGCCGGAGAAACAGACTCTACTAGCGCCAACACCAACACCAATGGCTACTCTTTCCCGAACCCTAACATAGTCCGGCCGCCGAGGCCGCGGCGGATAATACTGGTGCGGCACGGGGAGAGCGAGGGGAACGTGGACGAGAGCGCCTACACCAGAATCGCGGATCCTAGAATCAGTCTGACACAGAGGGGAATCAGGGAGGCGGAGGAATGCGGGAGGGATATGAGGAGTATGATCGAAGGGGATGGAGTCGAGGATTGGAGTGTTTACTTCTACGTTTCGCCTTACAAAAGGACTCGCCAGACTCTGCAGCACTTGGCTACCTCCTTTGATCCTCCTCGAATTTCTGGTTTGAGAGAAGAACCTAGGTTGCGCGAGCAGGATTTTGGAAACTTTCAAGACAGAGAGCGAATGAGAGTTGAGAAAGCGATGAGAGTGCTATACGGTCGATTTTTCTACCGTTTTCCAAATGGAGAATCGGCTGCGGATGTTTATGACAGAATCACTGGTTTCAGAGAAACATTAAAATCAGACATTGATGTGGGAAGGTTTCAGCCGCCAGGGCAGAGAAACCCCAACATGAACTTGGTTCTTGTCTCCCATGGCCTCACTCTCAGAGTCTTTCTCATGAGATGGTACAAATGGACTGTGGATCAATATGAAAGACTCAACAATTTGGGCAATGGTAAAATGATTGTCATGGAGAAAGGCTTTGGTGGAAGGTACACTTTGCTGCTACACCACACAGAGAATGAACTGAGACAATTTGGGCTTACAGATGAGATGTTGATTGACCAAGAATGGCAAAAACATGCACAAATTGGAGAGTTGAACTATGATTGTGCAATGATGAATTCCTTTTTCACACATTTTGATGATCAATGCAATGTTACCTAA 987 47.62 MATLIAGLSPSSSKFHVFNSNISIRCCGDQSAGETDSTSANTNTNGYSFPNPNIVRPPRPRRIILVRHGESEGNVDESAYTRIADPRISLTQRGIREAEECGRDMRSMIEGDGVEDWSVYFYVSPYKRTRQTLQHLATSFDPPRISGLREEPRLREQDFGNFQDRERMRVEKAMRVLYGRFFYRFPNGESAADVYDRITGFRETLKSDIDVGRFQPPGQRNPNMNLVLVSHGLTLRVFLMRWYKWTVDQYERLNNLGNGKMIVMEKGFGGRYTLLLHHTENELRQFGLTDEMLIDQEWQKHAQIGELNYDCAMMNSFFTHFDDQCNVT 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1976587 1980131 - Cp4.1LG05g03110.1 Cpe05g00354 469559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00354 328 MobiDBLite consensus disorder prediction 29 53 - -
Cpe05g00354 328 CDD HP_PGM_like 62 276 IPR013078 -
Cpe05g00354 328 PANTHER OS06G0109000 PROTEIN 12 322 - -
Cpe05g00354 328 PANTHER BROAD-RANGE ACID PHOSPHATASE DET1 12 322 - -
Cpe05g00354 328 Gene3D - 59 297 IPR029033 -
Cpe05g00354 328 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 65 74 IPR001345 GO:0003824
Cpe05g00354 328 Pfam Histidine phosphatase superfamily (branch 1) 63 265 IPR013078 -
Cpe05g00354 328 MobiDBLite consensus disorder prediction 29 51 - -
Cpe05g00354 328 SMART PGAM_5 62 238 IPR013078 -
Cpe05g00354 328 SUPERFAMILY Phosphoglycerate mutase-like 60 271 IPR029033 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00354 - - - csv:101215294 533.872
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00141 Cpe-Chr4:1333697 Cpe05g00354 Cpe-Chr5:1976587 1.06E-91 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g24 . . . . . . . . . . Cma02g01432 . Car02g01200 . . . Cpe05g00354 . . . . . . . . . . . . . . Cone8ag0285 . . . . Csa05g00257 Chy09g01250 . . . . . . . . . . Cmo02g01466 . . . . . . . Bhi12g00293 . . Lac11g2064 Hepe06g1522 . Lcy12g1626 Cla01g00242 Cam01g0247 Cec01g0240 Cco01g0253 Clacu01g0245 Cmu01g0235 . Lsi09g00233 . . Cme09g01785
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013248 0 1 0 0 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00354 Cpe_Chr05 FPKM 6.727073 7.912689 1.91221 2.676043 16.66667 15.352821 17.321203 0.312603 0.466238 0.345155