Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00366 ATGACGGAGCATCACGAGCACGAGCATGAGGAGCCCAAAGCCGAGTCGTTGATTGACAAGATTGCCGAGAAGATTCACGCTCATGATTCCTCTTCTTCCGATTCCGAGGATGATAAGGGGAGTGCTTCTGCTACTATCAAATCTAAGATTTATCGCCTCTTCGGCAGGGAAAGACCCGTCCACAAGGTTTTTGGTGGTGGGAAACCGGCTGATATCTTCCTGTGGAGAAACAAAAAGGTCTCCGGTGGAGTTCTAGGAGGAGCCACAGTTGCATGGATTTTGTTTGAGCTGCTTGAGTATCACTTTCTGACCTTGATTTGCCACATTTTGATGGCTGCTCTGGCAGTAGTGTTTTTGTGGTCTAATGCTTCTTTCTTCATTAACAAGTCTCTGCCACACATCCCTCAAGTTCACATTCCAGAGGGGCCAGTTAAAGAGATTGCCTCTGCTTTGAGAGTTGAAATCAATAGGGCCATCGCTGTGTTGAGAGAAATTGCATCAGGAAGAGATCTGAAGAGCTTTCTTTCTGCAATTGCTGGTTTGTGGGTTCTGTCCATTGTAGGAAGTTGGTTCAACTTCCTTACCCTGCTATATATTGGAATTATTTTGCTCTTCACTGTGCCTGTGTTCTACGAGAAATACGACGACAAGGTCGATGCGTATGCAGAGAAGGCAATGGCAGAGCTGAAGAAGCAGTATGCAGTGTTTGATGCGAAAGTGTTGTCTAAAATCCCAAGAGGACCACTGAAGGACAAGAAGATTGCTTGA 768 45.83 MTEHHEHEHEEPKAESLIDKIAEKIHAHDSSSSDSEDDKGSASATIKSKIYRLFGRERPVHKVFGGGKPADIFLWRNKKVSGGVLGGATVAWILFELLEYHFLTLICHILMAALAVVFLWSNASFFINKSLPHIPQVHIPEGPVKEIASALRVEINRAIAVLREIASGRDLKSFLSAIAGLWVLSIVGSWFNFLTLLYIGIILLFTVPVFYEKYDDKVDAYAEKAMAELKKQYAVFDAKVLSKIPRGPLKDKKIA 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2062288 2064865 + Cp4.1LG05g03050.1 Cpe05g00366 469571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00366 255 PANTHER RETICULON 6 254 IPR045064 GO:0009617
Cpe05g00366 255 PANTHER RETICULON-LIKE PROTEIN 6 254 - -
Cpe05g00366 255 Pfam Reticulon 70 225 IPR003388 -
Cpe05g00366 255 ProSiteProfiles Reticulon domain profile. 69 255 IPR003388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00366 - - - csv:101212804 463.766
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00366 Cpe13g00128 CCT
Cpe05g00366 Cpe13g00128 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00424 Cpe-Chr1:2450337 Cpe05g00366 Cpe-Chr5:2062288 6.04E-47 dispersed
Cpe01g00561 Cpe-Chr1:3247621 Cpe05g00366 Cpe-Chr5:2062288 7.74E-71 dispersed
Cpe01g02483 Cpe-Chr1:20483902 Cpe05g00366 Cpe-Chr5:2062288 7.47E-42 dispersed
Cpe03g01756 Cpe-Chr3:13282355 Cpe05g00366 Cpe-Chr5:2062288 1.82E-109 dispersed
Cpe05g00366 Cpe-Chr5:2062288 Cpe09g00055 Cpe-Chr9:335019 1.10E-100 dispersed
Cpe08g01202 Cpe-Chr8:8816617 Cpe05g00366 Cpe-Chr5:2062288 1.46E-39 dispersed
Cpe09g01130 Cpe-Chr9:9698914 Cpe05g00366 Cpe-Chr5:2062288 2.22E-52 transposed
Cpe13g00128 Cpe-Chr13:925518 Cpe05g00366 Cpe-Chr5:2062288 4.27E-155 wgd
Cpe14g00072 Cpe-Chr14:400297 Cpe05g00366 Cpe-Chr5:2062288 1.91E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g61 Blo02g01126 . Bda06g00125 Bda08g00499 Bpe05g00665 Bpe07g00090 . . Cmo06g01077 . Cma02g01416 Cma15g01257 Car02g01186 Car15g01134 . . Cpe05g00366 . . . . . . . . . . . . . . Cone8ag0269 Cone12ag0275 Cone6ag0819 Cone9ag0818 . Csa05g00229 Chy09g01271 . . . . . . . . Bma12g00060 . Cmo02g01447 Cmo15g01325 . . Car06g00886 . . Cpe13g00128 Bhi12g00174 . . Lac11g2034 Hepe06g1503 . Lcy12g1596 Cla01g00212 Cam01g0217 Cec01g0211 Cco01g0215 Clacu01g0212 Cmu01g0206 Cre09g2301 Lsi09g00200 . . Cme09g01814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000326 4 3 4 3 4 4 7 4 4 5 4 4 7 3 4 7 4 9 7 4 4 4 4 4 4 4 4 6 4 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00366 Cpe_Chr05 FPKM 97.844429 99.262222 33.670631 35.548882 29.209503 29.381659 30.543289 26.744282 25.421076 27.9133