Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00371 ATGGCAGCGACGCGCGTGGAGGGAAACACTTCTGGGTTCGTTCGTTCTGTTCTCTACAGACCTCCGATGGAAGCTCTGTGGATTTTCAGCTTCGTTCTCGTTCTGGGGTTGGTTTTTGCGCCGATCAATGGCGACCCAGTTGAAGATAAGCGAGCTTTGCTTGATTTTGTGAAGAATCTTCCTCATTCTCGCTCTCTTAATTGGAATGCGGCTTCTCCGGTTTGCCATTACTGGACTGGTATAACTTGCAGTAAAGATGATTCTCGTGTTATAGCCGTTCGATTGCCCGGAGTTGGCTTCCACGGCCCGATTCCGGCGAACACTCTCAGCCGGCTCTCGGCGTTACAAATCTTGAGTCTAAGATCCAACCGTATAACAGGGGATTTCCCATCTGATTTCTCAAATCTTATTAACTTGTCTTATCTTTATCTTCAGTTCAACAACTTCTCCGGGCCATTGCCTTCCAATTTCTCTGTTTGGAAGAATCTCACCTCTGTGAATCTCTCTAACAATGGCTTCAATGGCCGCATTCCTTATTCGCTTTCTAATCTTCCAGCACTCACAGGTTTGAGTCTCGCAAATAACTCTCTCTCAGGAGAAATCCCTGACCTCCAAATGCCCAAATTGCAGATTCTGGATTTATCCAACAACAAACTGAATGGGAGTGTGCCTAAATCATTACAGAGATTTCCAAGGTCTGTATTTGTAGGCAATGACATATCCTTCGACAGTTCTTCGCCAAACAATCCTCCCCTGCCCCCACCATTGCCTTTGTGGAATGCAAAGCCTAAGAATGCTGGTGGGCTTGGAGAAGCAGCATTATTAGGAATTATAATAGCTGGTGCTATTCTGGGGCTCTTAGCATTTGGCTTTCTGATACTTGTATGCTGCTCAAGAAGGAAGAGGGAAGCATATTCAGGGGATCTGCAGAAAGGTGGAATGTCGCCGGAGAAGGTGATATCAAGGACTCAAGATGCAAACAACAGATTGGTGTTCTTTGAGGGGTGCCATTATGCTTTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTGTTGGGGAAGGGGACTTTTGGTACTGCATACAAAGCAATTCTGGAGGACGCCACCACTGTTGTTGTTAAGAGGTTGAAGGATGTAAGTGCTGGGAAACGTGATTTTGAGCAGCAAATGGAGATTGTTGGCAGTATCAGGCACGAGAATGTGGCTGAGTTGAAGGCCTATTATTATTCCAAAGATGAGAAGCTGATGGTTTATGACTTCTATGGTCAGGGTAGCGTCTCGGCTATGTTGCACGGTGAACGCGGAGAGGAAAAGACCCCATTAGATTGGGACACTAGACTGAGAATTGCAGTTGGTGCAGCACGAGGGATTGCTCGAGTCCATGCCGAAAATGGAGGGAAGCTAGTCCATGGCAATGTGAAATCCTCAAACATCTTTCTAAACTCTCAACAATATGGATGTGTGTCTGATCTTGGACTAGCAACGATAACAAGCTCACTCTCTCCACCTATATCCCCTGAAGTATTTGATATACAGCTAATGAGGTATCCCAACATAGAGGAAGAAATGGTTGAGATGTTGCAGATAGCCTTATCATGTGTGGCCAGGATACCAGATCAGAGACCTAAAATGGCAGAAATTGTGACGATGATCGAAACCGTTCGACCAATGGAAGCCGAGAATCGACCTTCTTCCACGCATCAATCTGAAACTTCAATGCCACAAGCTGTTGGGACAGAAAATTTAGCCTCTCAATTTGAATCTCTTTTTCAGATTCTAGTTTTGCAACAGTAA 1797 45.46 MAATRVEGNTSGFVRSVLYRPPMEALWIFSFVLVLGLVFAPINGDPVEDKRALLDFVKNLPHSRSLNWNAASPVCHYWTGITCSKDDSRVIAVRLPGVGFHGPIPANTLSRLSALQILSLRSNRITGDFPSDFSNLINLSYLYLQFNNFSGPLPSNFSVWKNLTSVNLSNNGFNGRIPYSLSNLPALTGLSLANNSLSGEIPDLQMPKLQILDLSNNKLNGSVPKSLQRFPRSVFVGNDISFDSSSPNNPPLPPPLPLWNAKPKNAGGLGEAALLGIIIAGAILGLLAFGFLILVCCSRRKREAYSGDLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVAELKAYYYSKDEKLMVYDFYGQGSVSAMLHGERGEEKTPLDWDTRLRIAVGAARGIARVHAENGGKLVHGNVKSSNIFLNSQQYGCVSDLGLATITSSLSPPISPEVFDIQLMRYPNIEEEMVEMLQIALSCVARIPDQRPKMAEIVTMIETVRPMEAENRPSSTHQSETSMPQAVGTENLASQFESLFQILVLQQ 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2111525 2115152 + Cp4.1LG05g03090.1 Cpe05g00371 469576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00371 598 PANTHER PROTEIN, PUTATIVE-RELATED 43 506 - -
Cpe05g00371 598 ProSiteProfiles Protein kinase domain profile. 347 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g00371 598 Pfam Leucine rich repeat N-terminal domain 48 84 IPR013210 -
Cpe05g00371 598 PANTHER OS05G0588300 PROTEIN 507 566 - -
Cpe05g00371 598 PANTHER PROTEIN, PUTATIVE-RELATED 507 566 - -
Cpe05g00371 598 Pfam Protein tyrosine and serine/threonine kinase 351 497 IPR001245 GO:0004672|GO:0006468
Cpe05g00371 598 Gene3D Ribonuclease Inhibitor 47 247 IPR032675 -
Cpe05g00371 598 Pfam Leucine Rich repeats (2 copies) 185 221 IPR025875 -
Cpe05g00371 598 ProSitePatterns Protein kinases ATP-binding region signature. 353 384 IPR017441 GO:0005524
Cpe05g00371 598 Pfam Leucine rich repeat 104 149 IPR001611 GO:0005515
Cpe05g00371 598 Gene3D Phosphorylase Kinase; domain 1 314 421 - -
Cpe05g00371 598 PANTHER OS05G0588300 PROTEIN 43 506 - -
Cpe05g00371 598 SUPERFAMILY Protein kinase-like (PK-like) 351 553 IPR011009 -
Cpe05g00371 598 SUPERFAMILY L domain-like 59 230 - -
Cpe05g00371 598 Gene3D Transferase(Phosphotransferase) domain 1 504 579 - -
Cpe05g00371 598 Gene3D Transferase(Phosphotransferase) domain 1 423 503 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00371 Cpe-Chr5:2111525 Cpe05g00620 Cpe-Chr5:3765216 0 dispersed
Cpe13g00125 Cpe-Chr13:876777 Cpe05g00371 Cpe-Chr5:2111525 0 wgd
Cpe14g00065 Cpe-Chr14:361080 Cpe05g00371 Cpe-Chr5:2111525 4.86E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62393 PF07714 PK_Tyr_Ser-Thr 5.20E-18 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00371 - - csv:101211836 892.878