Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00373 ATGAGTATGGATTTCGACTCTGTTTTTGACCTCCCTGTTAAGTTCACCGAGCATCGTAACCATGTTAAGCTCTCTTCAATGCCGGAAATTACGCCGAGAGTTGTACGAATTTCGTTTACCGACGGTGACGCCACTGATTCCTCCAGTGATGATGAGAACGAAATGTTTGGTCGCCGCAGAGTGAAGAAGTTTGTTAATGAGATTACGATTGAGCCGTCTTGTTCTGGAGAAGGAAATGGAATCTGGGGTGTGAATAGATCGGCGAGAAATGGCCGGAGACGGTCGTCCGGGAAATGTGGGGTCCCGTCCAGGAGTCGTCGGTCGGTGAAGATGCCGGATGGGAAGAAGTTCCGCGGTGTGAGACAAAGACCGTGGGGAAAATGGGCTGCCGAAATCAGAGACCCACTGCGGCGCGTACGGGTGTGGCTAGGAACTTATGACACGGCAGAGGAAGCTGCCATGGTTTACGACAACGCCGCCATTCAACTCCGGGGTCCTGATGCACTGACCAATTTCACTACCCAATCGCCCAAAAAATGCTCCGCCTACGACTCCGGCGAAGAGTCGAACAACAACATTTGCTCTCCGACCTCAGTCCTCCGGTGTCCATCGCCTCCAAACGAAGAGGCCCAATCTCAACTCCCCGGCGAGCCAGACAACTCGTCCGTATCGGAAAATTTCTCGTCGGAGTTCTCAGACTTCTCGAGCTACTCCGACACCTTCATTCCGGACGACATTTTCGCCTTCGAATCTTCAATTCCGACATTGTTAGACGACGAGATAGGCCTACATCACCAAACCAACTTCTTCGGCGATGACAGTTTCTTCAACGGCGTGTTTCACAGTCCCATCGAAGAAACCGGGTTCGGGTTCGGGTTCGAGTACCCTACTCCCCCTACAGACGACTTCTTCCAAGACTTCAGCGACGTGTTCGGTTCGGATCCTCTCGTTGCCCTTTAA 960 52.4 MSMDFDSVFDLPVKFTEHRNHVKLSSMPEITPRVVRISFTDGDATDSSSDDENEMFGRRRVKKFVNEITIEPSCSGEGNGIWGVNRSARNGRRRSSGKCGVPSRSRRSVKMPDGKKFRGVRQRPWGKWAAEIRDPLRRVRVWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQSPKKCSAYDSGEESNNNICSPTSVLRCPSPPNEEAQSQLPGEPDNSSVSENFSSEFSDFSSYSDTFIPDDIFAFESSIPTLLDDEIGLHHQTNFFGDDSFFNGVFHSPIEETGFGFGFEYPTPPTDDFFQDFSDVFGSDPLVAL 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2127719 2128678 + Cp4.1LG05g03010.1 Cpe05g00373 469578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00373 319 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Cpe05g00373 319 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Cpe05g00373 319 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 315 - -
Cpe05g00373 319 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Cpe05g00373 319 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Cpe05g00373 319 MobiDBLite consensus disorder prediction 202 227 - -
Cpe05g00373 319 Gene3D AP2/ERF domain 115 175 IPR036955 GO:0003700|GO:0006355
Cpe05g00373 319 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Cpe05g00373 319 MobiDBLite consensus disorder prediction 85 118 - -
Cpe05g00373 319 CDD AP2 115 172 IPR001471 GO:0003700|GO:0006355
Cpe05g00373 319 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 12 315 - -
Cpe05g00373 319 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00635 Cpe-Chr1:3664021 Cpe05g00373 Cpe-Chr5:2127719 1.85E-07 dispersed
Cpe05g00373 Cpe-Chr5:2127719 Cpe05g01012 Cpe-Chr5:6604698 1.74E-26 dispersed
Cpe05g00617 Cpe-Chr5:3755259 Cpe05g00373 Cpe-Chr5:2127719 4.73E-06 dispersed
Cpe14g00476 Cpe-Chr14:2993913 Cpe05g00373 Cpe-Chr5:2127719 7.26E-16 dispersed
Cpe10g01048 Cpe-Chr10:6125733 Cpe05g00373 Cpe-Chr5:2127719 6.65E-19 transposed
Cpe13g00123 Cpe-Chr13:859999 Cpe05g00373 Cpe-Chr5:2127719 5.37E-30 wgd
Cpe14g00063 Cpe-Chr14:348682 Cpe05g00373 Cpe-Chr5:2127719 1.00E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49501 PF00847 AP2 3.80E-14 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00373 - - csv:101210444 499.975