Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00398 CAATTGAAGCGGAAGAGTGAGGCAGCAGATTATGAAGCTGAGTCAACTGATAGAGCAGCTGGTCCTAGATTTACTGAAGTAGTTAACAGTTCCCATCAAACACCTGTATCTGTAAAAGGAGGAAAGGGAAACAAATCAAGGCTAACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTATGCAAACAATCTTACTCCAGTTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCCGACACGTTGGAGGTACAAAAAAGACGAATATATGACATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGATCAGGGGATGTTGATGACAACTATGCTGGTCTACAGGCGGAAGTAGAGAACCTTTCCATGGAGGAGAATGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGAGACCTCAGTGAAGAGGAGAACAACCAAAGGCAATTGTGGTTATTTGTAACCGAGGAAGACATCAAGGAGTTGCCGTGTTTCCAGAATGAAACTCTTATAGCTATTAAGGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTATAGGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTATAAATGGTGTGGAAGTGTCCCCAAGCTTGCCGTCAAGTTCTGGGTTTAATGAAACACCTGCAGCAACGCTAGTAACGGATGATACCAGGGGAAAGGAAGTTGAAACACGGGAGCAAGATGTAAATAGAATGTGCTCTGATCTAAATGCTTCGCAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGCGGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGCATCACTGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAGCTGAGTACATTTCATGAAGATTACAGTATTGATAATGTCAGCACACCCCAAGCCCAGAATCCACCTTCCAATAATTCACCTGATGCGCCTTCTGCTAATCCTTCTAGCAGTTAA 1179 43.34 QLKRKSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEENGLDEQIREMQERLRDLSEEENNQRQLWLFVTEEDIKELPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLINGVEVSPSLPSSSGFNETPAATLVTDDTRGKEVETREQDVNRMCSDLNASQDFVGGIMKIVPSAVDSDADYWLLSDADVSITDMWRTEPGVEWNELSTFHEDYSIDNVSTPQAQNPPSNNSPDAPSANPSSS 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2254187 2257434 + Cp4.1LG05g04000.1 Cpe05g00398 469603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00398 392 MobiDBLite consensus disorder prediction 1 67 - -
Cpe05g00398 392 Pfam E2F/DP family winged-helix DNA-binding domain 80 143 IPR003316 GO:0005667|GO:0006355
Cpe05g00398 392 SUPERFAMILY Winged helix DNA-binding domain 78 141 IPR036390 -
Cpe05g00398 392 MobiDBLite consensus disorder prediction 47 67 - -
Cpe05g00398 392 Gene3D - 73 145 IPR036388 -
Cpe05g00398 392 Coils Coil 156 197 - -
Cpe05g00398 392 PANTHER TRANSCRIPTION FACTOR E2F 2 381 IPR015633 GO:0000978|GO:0006357
Cpe05g00398 392 CDD E2F_DD 154 261 IPR032198 GO:0046983
Cpe05g00398 392 MobiDBLite consensus disorder prediction 1 19 - -
Cpe05g00398 392 MobiDBLite consensus disorder prediction 364 392 - -
Cpe05g00398 392 Pfam E2F transcription factor CC-MB domain 159 261 IPR032198 GO:0046983
Cpe05g00398 392 SMART E2F_TDP_2 78 143 IPR003316 GO:0005667|GO:0006355
Cpe05g00398 392 Coils Coil 94 114 - -
Cpe05g00398 392 Gene3D - 150 262 - -
Cpe05g00398 392 SUPERFAMILY E2F-DP heterodimerization region 155 261 IPR037241 -
Cpe05g00398 392 PANTHER TRANSCRIPTION FACTOR E2FB 2 381 - -
Cpe05g00398 392 MobiDBLite consensus disorder prediction 26 40 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00398 Cpe16g00820 CCT
Cpe05g00398 Cpe16g00820 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00398 Cpe-Chr5:2254187 Cpe10g00310 Cpe-Chr10:1803394 8.15E-144 dispersed
Cpe16g00820 Cpe-Chr16:7906566 Cpe05g00398 Cpe-Chr5:2254187 0 wgd
Cpe19g00497 Cpe-Chr19:4261540 Cpe05g00398 Cpe-Chr5:2254187 2.09E-137 wgd
Cpe05g00398 Cpe-Chr5:2254187 Cpe05g00446 Cpe-Chr5:2557752 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49504 PF16421 E2F_CC-MB 4.60E-35 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00398 K06620 - csv:101219318 669.077