Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe05g00398 | CAATTGAAGCGGAAGAGTGAGGCAGCAGATTATGAAGCTGAGTCAACTGATAGAGCAGCTGGTCCTAGATTTACTGAAGTAGTTAACAGTTCCCATCAAACACCTGTATCTGTAAAAGGAGGAAAGGGAAACAAATCAAGGCTAACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTATGCAAACAATCTTACTCCAGTTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCCGACACGTTGGAGGTACAAAAAAGACGAATATATGACATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGATCAGGGGATGTTGATGACAACTATGCTGGTCTACAGGCGGAAGTAGAGAACCTTTCCATGGAGGAGAATGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGAGACCTCAGTGAAGAGGAGAACAACCAAAGGCAATTGTGGTTATTTGTAACCGAGGAAGACATCAAGGAGTTGCCGTGTTTCCAGAATGAAACTCTTATAGCTATTAAGGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTATAGGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTATAAATGGTGTGGAAGTGTCCCCAAGCTTGCCGTCAAGTTCTGGGTTTAATGAAACACCTGCAGCAACGCTAGTAACGGATGATACCAGGGGAAAGGAAGTTGAAACACGGGAGCAAGATGTAAATAGAATGTGCTCTGATCTAAATGCTTCGCAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGCGGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGCATCACTGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAGCTGAGTACATTTCATGAAGATTACAGTATTGATAATGTCAGCACACCCCAAGCCCAGAATCCACCTTCCAATAATTCACCTGATGCGCCTTCTGCTAATCCTTCTAGCAGTTAA | 1179 | 43.34 | QLKRKSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEENGLDEQIREMQERLRDLSEEENNQRQLWLFVTEEDIKELPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLINGVEVSPSLPSSSGFNETPAATLVTDDTRGKEVETREQDVNRMCSDLNASQDFVGGIMKIVPSAVDSDADYWLLSDADVSITDMWRTEPGVEWNELSTFHEDYSIDNVSTPQAQNPPSNNSPDAPSANPSSS | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2254187 | 2257434 | + | Cp4.1LG05g04000.1 | Cpe05g00398 | 469603 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe05g00398 | 392 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
Cpe05g00398 | 392 | Pfam | E2F/DP family winged-helix DNA-binding domain | 80 | 143 | IPR003316 | GO:0005667|GO:0006355 | |
Cpe05g00398 | 392 | SUPERFAMILY | Winged helix DNA-binding domain | 78 | 141 | IPR036390 | - | |
Cpe05g00398 | 392 | MobiDBLite | consensus disorder prediction | 47 | 67 | - | - | |
Cpe05g00398 | 392 | Gene3D | - | 73 | 145 | IPR036388 | - | |
Cpe05g00398 | 392 | Coils | Coil | 156 | 197 | - | - | |
Cpe05g00398 | 392 | PANTHER | TRANSCRIPTION FACTOR E2F | 2 | 381 | IPR015633 | GO:0000978|GO:0006357 | |
Cpe05g00398 | 392 | CDD | E2F_DD | 154 | 261 | IPR032198 | GO:0046983 | |
Cpe05g00398 | 392 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cpe05g00398 | 392 | MobiDBLite | consensus disorder prediction | 364 | 392 | - | - | |
Cpe05g00398 | 392 | Pfam | E2F transcription factor CC-MB domain | 159 | 261 | IPR032198 | GO:0046983 | |
Cpe05g00398 | 392 | SMART | E2F_TDP_2 | 78 | 143 | IPR003316 | GO:0005667|GO:0006355 | |
Cpe05g00398 | 392 | Coils | Coil | 94 | 114 | - | - | |
Cpe05g00398 | 392 | Gene3D | - | 150 | 262 | - | - | |
Cpe05g00398 | 392 | SUPERFAMILY | E2F-DP heterodimerization region | 155 | 261 | IPR037241 | - | |
Cpe05g00398 | 392 | PANTHER | TRANSCRIPTION FACTOR E2FB | 2 | 381 | - | - | |
Cpe05g00398 | 392 | MobiDBLite | consensus disorder prediction | 26 | 40 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe05g00398 | Cpe16g00820 | CCT | |
Cpe05g00398 | Cpe16g00820 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g00398 | Cpe-Chr5:2254187 | Cpe10g00310 | Cpe-Chr10:1803394 | 8.15E-144 | dispersed | |
Cpe16g00820 | Cpe-Chr16:7906566 | Cpe05g00398 | Cpe-Chr5:2254187 | 0 | wgd | |
Cpe19g00497 | Cpe-Chr19:4261540 | Cpe05g00398 | Cpe-Chr5:2254187 | 2.09E-137 | wgd | |
Cpe05g00398 | Cpe-Chr5:2254187 | Cpe05g00446 | Cpe-Chr5:2557752 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49504 | PF16421 | E2F_CC-MB | 4.60E-35 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe05g00398 | K06620 | - | csv:101219318 | 669.077 |