Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00411 ATGGCGGAAGAACATAGATGCCAAGCGCCGAAGCTTTGCGTTAACAACTGCGGATTCTTCGGGAGTCCTGCGACGCAAGATCTCTGCTCAAAGTGCTACCGAGATCTGCAGTTGAAGGAACAGCAATCCTCCTCCGCCAAACTCGCCTTAAACCAAACCCTAACATCCGCCGCCGCTGCCACCATCGCGTCATCCTCCTTTGCGGACGCGTCGTTGTTAAATCTCAAATCGGATTCATTGGAAGCGAACCAGTCCTTTGAGGAGAAGGCGCAGGTGGCGGCAGATGTAACTCCAGCGCCGGCGCAGCAGCAGGCGAGCCGATGCACGACGTGCAGGCGGCGCGTAGGATTGACAGGGTTCAAGTGCAGGTGCGGGATGGTGTACTGTGGGACTCACCGGTACCCGGAGCAACACGGGTGTGAATTTGACTTCAAAGGGATGGGGAAGGATCAGATCGCGAAGGCAAATCCGGTGGTGAAAGGGGAGAAACTACAGAGGATCTGA 504 56.15 MAEEHRCQAPKLCVNNCGFFGSPATQDLCSKCYRDLQLKEQQSSSAKLALNQTLTSAAAATIASSSFADASLLNLKSDSLEANQSFEEKAQVAADVTPAPAQQQASRCTTCRRRVGLTGFKCRCGMVYCGTHRYPEQHGCEFDFKGMGKDQIAKANPVVKGEKLQRI 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2318044 2318547 + Cp4.1LG05g04030.1 Cpe05g00411 469616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00411 167 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 56 - -
Cpe05g00411 167 ProSiteProfiles Zinc finger AN1-type profile. 102 148 IPR000058 GO:0008270
Cpe05g00411 167 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Cpe05g00411 167 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 167 - -
Cpe05g00411 167 Gene3D - 1 65 - -
Cpe05g00411 167 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 167 - -
Cpe05g00411 167 Gene3D - 81 163 IPR035896 -
Cpe05g00411 167 SUPERFAMILY AN1-like Zinc finger 95 162 IPR035896 -
Cpe05g00411 167 SMART AN1_Zf_4 108 145 IPR000058 GO:0008270
Cpe05g00411 167 Pfam AN1-like Zinc finger 108 144 IPR000058 GO:0008270
Cpe05g00411 167 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677|GO:0008270
Cpe05g00411 167 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00411 Cpe-Chr5:2318044 Cpe19g00465 Cpe-Chr19:4108060 5.67E-57 dispersed
Cpe16g00809 Cpe-Chr16:7859759 Cpe05g00411 Cpe-Chr5:2318044 6.12E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00411 - - csv:101219115 237.654