Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00419 ATGAGCGGCGATGGCCGAAGGCGAGGCCGCGCGGACAACAGTAGGTCGAAGAAGCAGAGGATAATCCGGTCCGCCGAGGAGGAGATCGAATCAAAGCTTGGGTTTGATCTTTTCTCTGAAGGCGATAAGAGGCTTGGATGGTTGCTCACTTTTGCTTCTTCAGCTTTGGAGGATCAGGACACTGGAAAGATCTATAGCTGTATCGATCTTTATTTTGTGGCACAGGATGGCAGCAGTTTCAAGTCAAAATATAAGTTTCGTCCTTACTTCTATGCAGCGACAAAGGACAAAATGGAAACTGATGTGGAGGCTTATTTGAGACGACGTTATGAAGGTCAAGTAGCTGATATTGAGATTTTAGAAAAAGAAGACCTTGATCTTAAGAATCATCTGTCTGGCTTGCGCAAGGCATATTTAAAGCTATCATTTGACACTGTTCAAGAATTGATGAACGTGAAGAGTGAACTGTTGCGAGTTGTTGAAAGCAATTGGGCAAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGGGAACAAAAGCCTCAAGATTTTGTAGAATGCATTGTTGATCTTCGAGAGTATGATGTTCCTTACCATGTTCGCTTTGCTATTGATCATGATGTGCGCTGCGGACAATGGTACGATGTTAGTGTATCAAGCACTGGTGTTTCACTTGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCACATATGTGCATTTGATATCGAGACCACAAAGCTACCATTAAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACATGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATCGAGAATTTGGAGTACACTCCAAAACCAGAATATGAAGGGTTCTTTAAAGTGACCAATGTGAAAAATGAGTTAGAGCTTCTCAAATTTTGGTTTGCCCATATGCGAGAGGTGAAACCTGGTATCTATGTTACCTACAATGGCGATTATTTTGACTGGCCATTCATTGAAAGCAGAGCAGCGTATCATGGATTTAAAATGAGTGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGGGAATGCCGTTCTAAATTTGCTTGTCATTTGGATTGCTTTGCGTGGGTTAAGCGTGATAGTTATCTTCCTCAGGGTAGCCAAGGTCTGAAGGCCGTTACAAAAGCTAAATTGGGTTATGATCCTCTTGAAGTGAATCCCGAGGATATGGTGCGGTTTGCAAAGGAAAAGCCTCAGATGATGGCGTCCTATTCGGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCTTTCATTTTTTCTCTAGCAACTATTATTCCGATGTCACCAGATGAGGTGTTGCGCAAAGGAAGTGGGACCCTTTGTGAGATGCTTCTAATGGTTCAGGCTTACCAGGCTAATGTTGTGTGTCCTAACAAACATCTATCAGATCCAGAGAAATTCTATAACAACCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGCCTGGAGAGTGGTGTATTTAGATCCGACCTTCCTACCAGTTTTAGGCTTGATCCATCTGCCTATGATCAATTGATAAACAATCTGGATCGAGATCTGCAGTATGCCATACAAGTAGAAGGAAAAACAGACTTGGAGTTAGTGTCAAATTATAGTGATGTGAAGAATGCTATCATGGAAAAGCTTATTAGATTGCGGGATGAGCCTGTACGTGAAGAGGGCCCTCTGATATATCACCTTGATGTAGCTGCAATGTATCCCAACATTATTTTAACAAATAGACTTCAGCCGTCGTCAATAGTTACAGATGAGGTTTGCACTGCTTGTGATTTCAATCGTCCTGAGAAAACTTGTCTACGAAAACTTGAATGGGTTTGGCGTGGAGAAGTATTCATGGCTAAAAAAAGTGACTATTATCATCTGAAGAATCAAATTGAGTCTGAGTTTGTTGATAGCGGTAGTGCTCGGTTGTCAAAATCATTTCTTGAACTTCCAAAGTTGGAGCAGCAAGCAAAGCTCAAAGAACGTTTAAAGAAATACTGTCAGAAGGCTTATAAACGAGTACTTGATAAGCCAGTCAATGAAGTTCGAGAAGCAGGGATCTGCATGAGAGAAAACTCTTTCTATATTGACACTGTTCGTAGTTTTCGAGATAGAAGGTACGAATACAAAGGGCTCAATAAAGTATGGAAGGGAAAATTATCAGAAGCTAAAGCAAGTGGAAATTCAATCAAGATCCAGGAAGCACAAGACATGGTAGTTCTTTATGATTCTCTACAACTCGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTGATGCGAAAGGGTGCTCGATGGTATTCAATGGAAATGGCTGGGGTAGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCGTCTGTTAATTGAAAAAATTGGAAAACCATTGGAGTTAGACACTGATGGTATCTGGTGTGCGCTACCTGGATCATTCCCAGAAAACTTTACCTTCAAAACAAAAGATCTGAAGAAGTTGACAATTTCATATCCATGTGTAATGCTTAATGTTGATGTGGCAAGGAACAACACAAATGACCAGTATCAGACGCTTATAGATCCTGTGAAGAAAATATATAAAACACATAGTGAATGCTCAATTGAATTTGAAGTAGATGGACCATACAAGGCAATGATCCTTCCTGCTTCCAAAGAAGAAGGCATTTTGATCAAGAAAAGATATGCTGTCTTCAATGATGATGGAACACTTGCAGAGCTAAAAGGCTTTGAGATTAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGTTGGACAATTTTGTTCTTGAGCAAACTTATGGGATTTTAGTATCCGAAATCAGAGGCCTTGAGGCTGAACTTTTTGACAAGTTTCTTCACGGTTCCACCTTAGAAGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGCTAGATCTTCTAGATAATCAAGGAAAAGATATTGCAGATAGCGAGTTGCTTGATTATATATCTGAATCCAGTACCATGAGCAAATCTTTGGCAGACTATGGAGAGCAGAAGTCTTGTGCTGTTACCACCGCAAGACGTCTTGCAGATTTTCTTGGTGATACAATGGTCAGAGATAAAGGCCTACGTTGTCAATATATAGTTGCATGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCAGTTGCAATCTTTGAGACTGATGCAGAGATTATGAAATTCTATGTGCGTAAATGGTGCAAGATTTCATCTGAAGTTGGCATCCGATCCATCATTGACTGGTCCTACTACAAGCAACGTCTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCAGCCATGCAAAAGGTTGCAAATCCTGTTCCTAGGGTTGTCCATCCTGATTGGTTACATAAGAAAGTTCGTGAGAAGGATGATAAATTTCGCCAACAGAAAGTAGCTGATATGTTTGCATCCTCAAACAGAGGTAAGCATTCAAAGAAGAATAGTGATGTCAGCTGCAGCAAGCATGTGGTGAATGAAGATAATTCTGACGATTTAGAAGATTTTCAAAAGAAAACAAATTCTACAAATGGCCCCAAACCAGTTGCCCGATGTTATGATGTCAGAGGAATGAAACATTCAAGTACAAGCTATAGCGAAATAAACTCCAAGGTGCAGGATAATTTTAATGAAGGATGTGAGCCTTCTTCACCTTTGCATGTTGAAAACATTGACAAAAATGTCGATTACAATGGATGGCTTGAAATGAAGAAGCGAAAGTGGAAGGATACTTTGGACAAGAGGAAGAAGCAAAAGCTGGTAAGTTTAAGGACTCCAGGTGCTGCTAATGATGTAACACGGGAGTTAAAGGGTGCTACGAATAATAAAGAGGCTCCTAGAACAGGTGTTGGTTCATATTTTAAGAGGCATGAAGGATCTATAACACGCTTCCATTGGCAGATTTTACAGCTTGTTCAGAGTTCACAGAGTGGCCAATATTTTGCTTGGGCGGTTGTTGAAGGACTTATGCTAAAGATTCCTATTACTGTTCCTAGAGTTTTTTACCTTAATTCCAAAGTACCTATTACAGATGAATTTGTGGGTAGGCGTGTTAACAAAACGCTTCCCCATGGAAGGCACAGTTACAACCTTTATGAGGTTGTGACTGATGAAGGTCAATTTAGAACACAGAGGAACAAACTTGCAGCCCTCCTTGCAGACCCAGAAGTAGAGGGAATCTATGAAAGCAAGGTACCATTGGAGTTCAAGTCCATCCTTCAGATTGGTTGTGTCTGTAAAGTTGATAAAACTGCTAAAAAACGAAATATTCAAGATGGATGGAGTCTGGATGAACTGCAAATGAAGACTACAACAGAATGCAATTATCTGGAAAAGCCAATCTCTTTCTTCTTTGTGTATCATAGCATTTCTGAAGGAAGAGCTATCTACATTACTTTTTTTCCCTCCACGAGATCGATAGTTGTGGTGATAGTTAGTCCTTACCAAAACAAAGACTTGTCATCAACTTTTCTCGAAAGGCAATTTCGCGAAACTTGTCAAATACTGTCCGGTGAATCACAACCATTTGAGAGTGGTATAACTTGTAAGGTTGACTATGTTGTTAACATCAAAGAAGCTGAAGTGATTTTGCAAAGATCGATAACAGAACACAGGAGCTTAAACCATGGACCTATTGTAGCTGTAATTCAATGCCCAAATGTGCAACTGCTGAAGTCAGGTGTTCGAGCATTAGATGATTTTCCATGCGTGAGCATTCCTTTTAATGCTCGGGATAGCCAATATCAGGTTCTTGGTTGGCAACAAACAGCTGCAAAGATTGGAATGCAACGTTGTGCTGCATCATCCCAATGGTTGAATGAGAGAATCTCTCTTGCAAGATATGCCCATGTACCATTAGGAAATTTTGAACTTGATTGGCTAATTTTTACAGCAGATATATTTTTTTCAAGAGCACTACACGATCAACAGCAGGTACTTTGGATATCGGATGATGGTGTTCCAGATATAGGAGGCATTAACATGGAAGATGTGTGTTTTGTGGATGAGGTCCAACAACCTGTTCTGACGTACCCTGGAGCATATAGAAAAGTTTCCGTGGAGCTGAAGATCCACCATTTGGCGGTCAATGCCCTGCTGAAGAGCAGCCAAGTGAATGAAATGGAAGGAGGTAGTTTGTTTGGCTTTGAACATGATATGCAATATGGAGCCCAACTTTCTAATGAAGACGGTGGCTTTGACGAGGCTTCATCATCTGCGCCGACATTTCGTGTCCTGAAACAATTGATACAAAGGTGTCTTGCAGATGCTGTTACATCTGGAAATGTATATGCTGATGCAATTTTGCGGCATCTGTACCGATGGATTTGCAGCCCCCAATCAAGACTTCATGACCCTGCTCTTCATCGCTTACTCCACAAGGTTATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGAGCTACGAAAATTAGGTGCCACCATTATATTTGCAAACTTCTCAAAAATTATTATAGACACGGGAAGGTTTGATCTCCAGGCTGCTAAAGCATATTGTGATAGCTTGCTGAAAACAGTGCAAACAAGGGATCTGTTTGAGTGGATTGAATTGGAACCGTTACAGTTCTGGCACTCCCTGTTGTTTATGGATCAGTTTAACTACGGTGGAATCCCAGCAAAAGATGATGAGAGCACAGATATTGAATCTCAAGTTGATATAGTGGCCAACTGGAACATTGCTGAATATCTACCCAAGAAGATTCAGGATCACTTCGTTTTTATCATCTCTCAATTTTTGTATATTCCATGGAATTATGCAACCAAACAAGCTGAAGCAAGAGCATCATTGCCGCTTGGTGACACTTGTACCCCATCCATTACAGTTGCAGCTGCTGAATCGTTTGAATATCGTGTTACAGAACATCTCAAAGAGCAGCTAAGCTCTTACTTCAGCGACAAACTGTTGGGAATTGTTCGTGATATTGTTCTTCATATGAAAGGGATGGACAAAAACACCCAGGATATTTTACCAGATCAACCTTCGGGTAGCATACATAAAGGAGATGCTGCATTGGAATTCATTAAGCTCGTATGCGCTGTTTTGGCTCTTGATCAAAATGTCCTGCATGATGTTCTGGTAATGAGGAAGAATTTACTGAAGTATGTTCGTGTAAGAGAGTTCGCACCAGAAGCGGAGTTTTCTGATCCATGCTCGTCCATAATCTTACCAAACGTTATTTGCAGTTATTGTGATGATTGTCGAGATTTGGACTTGTGCCGTGACTCAGCTTTACTAGCACAAGAATGGCGCTGCGCCGTGCCACAATGCGAACAACCATACAACCGAGAAGTGATGGAGAATGCTCTGCTTCAAATCGTGAGGCAGAGGGAGCGCCTCTATCACCTACAGGATCTGGTATGCGTTCGCTGCAAGCAAGTCAAAGCAGCTCATTTGTCAGAACAGTGTGCTTGTGCTGGCTCATTTCAATGCAAAGATGTGGAAGATTTCTTCAGCAAGATGAGGATTCTCCTCAACGTAGCCACTCGTCAAAAGTTCCAATTGTTGCAAGAGTTCACCTCCTGGATCTTAGAAGTCTCGTAA 6675 40.88 MSGDGRRRGRADNSRSKKQRIIRSAEEEIESKLGFDLFSEGDKRLGWLLTFASSALEDQDTGKIYSCIDLYFVAQDGSSFKSKYKFRPYFYAATKDKMETDVEAYLRRRYEGQVADIEILEKEDLDLKNHLSGLRKAYLKLSFDTVQELMNVKSELLRVVESNWAKSDAAEAYDSILFGKREQKPQDFVECIVDLREYDVPYHVRFAIDHDVRCGQWYDVSVSSTGVSLEKRKDLLQRAEVHICAFDIETTKLPLKFPDAEYDMIMMISYMVDGHGYLIINRECVGEDIENLEYTPKPEYEGFFKVTNVKNELELLKFWFAHMREVKPGIYVTYNGDYFDWPFIESRAAYHGFKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYQANVVCPNKHLSDPEKFYNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDPSAYDQLINNLDRDLQYAIQVEGKTDLELVSNYSDVKNAIMEKLIRLRDEPVREEGPLIYHLDVAAMYPNIILTNRLQPSSIVTDEVCTACDFNRPEKTCLRKLEWVWRGEVFMAKKSDYYHLKNQIESEFVDSGSARLSKSFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVNEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKDLKKLTISYPCVMLNVDVARNNTNDQYQTLIDPVKKIYKTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQLDNFVLEQTYGILVSEIRGLEAELFDKFLHGSTLEECYSVVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKDDKFRQQKVADMFASSNRGKHSKKNSDVSCSKHVVNEDNSDDLEDFQKKTNSTNGPKPVARCYDVRGMKHSSTSYSEINSKVQDNFNEGCEPSSPLHVENIDKNVDYNGWLEMKKRKWKDTLDKRKKQKLVSLRTPGAANDVTRELKGATNNKEAPRTGVGSYFKRHEGSITRFHWQILQLVQSSQSGQYFAWAVVEGLMLKIPITVPRVFYLNSKVPITDEFVGRRVNKTLPHGRHSYNLYEVVTDEGQFRTQRNKLAALLADPEVEGIYESKVPLEFKSILQIGCVCKVDKTAKKRNIQDGWSLDELQMKTTTECNYLEKPISFFFVYHSISEGRAIYITFFPSTRSIVVVIVSPYQNKDLSSTFLERQFRETCQILSGESQPFESGITCKVDYVVNIKEAEVILQRSITEHRSLNHGPIVAVIQCPNVQLLKSGVRALDDFPCVSIPFNARDSQYQVLGWQQTAAKIGMQRCAASSQWLNERISLARYAHVPLGNFELDWLIFTADIFFSRALHDQQQVLWISDDGVPDIGGINMEDVCFVDEVQQPVLTYPGAYRKVSVELKIHHLAVNALLKSSQVNEMEGGSLFGFEHDMQYGAQLSNEDGGFDEASSSAPTFRVLKQLIQRCLADAVTSGNVYADAILRHLYRWICSPQSRLHDPALHRLLHKVMQKVFALLLAELRKLGATIIFANFSKIIIDTGRFDLQAAKAYCDSLLKTVQTRDLFEWIELEPLQFWHSLLFMDQFNYGGIPAKDDESTDIESQVDIVANWNIAEYLPKKIQDHFVFIISQFLYIPWNYATKQAEARASLPLGDTCTPSITVAAAESFEYRVTEHLKEQLSSYFSDKLLGIVRDIVLHMKGMDKNTQDILPDQPSGSIHKGDAALEFIKLVCAVLALDQNVLHDVLVMRKNLLKYVRVREFAPEAEFSDPCSSIILPNVICSYCDDCRDLDLCRDSALLAQEWRCAVPQCEQPYNREVMENALLQIVRQRERLYHLQDLVCVRCKQVKAAHLSEQCACAGSFQCKDVEDFFSKMRILLNVATRQKFQLLQEFTSWILEVS 2224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2363232 2388574 - Cp4.1LG05g04390.1 Cpe05g00419 469624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00419 2224 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Cpe05g00419 2224 CDD DNA_polB_epsilon_exo 240 444 - -
Cpe05g00419 2224 SUPERFAMILY DNA/RNA polymerases 469 1158 IPR043502 -
Cpe05g00419 2224 SMART DUF1744_2 1530 1915 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Cpe05g00419 2224 MobiDBLite consensus disorder prediction 1175 1194 - -
Cpe05g00419 2224 Pfam Domain of unknown function (DUF1744) 1546 1915 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Cpe05g00419 2224 Pfam DNA polymerase family B 597 1090 IPR006134 GO:0000166|GO:0003677
Cpe05g00419 2224 SMART polmehr3 239 842 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cpe05g00419 2224 MobiDBLite consensus disorder prediction 1204 1224 - -
Cpe05g00419 2224 Gene3D Palm domain of DNA polymerase 583 907 IPR023211 -
Cpe05g00419 2224 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 30 2221 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Cpe05g00419 2224 Gene3D - 920 1063 IPR042087 -
Cpe05g00419 2224 CDD POLBc_epsilon 503 1142 - -
Cpe05g00419 2224 SUPERFAMILY Ribonuclease H-like 66 467 IPR012337 -
Cpe05g00419 2224 MobiDBLite consensus disorder prediction 1 21 - -
Cpe05g00419 2224 Gene3D - 238 468 IPR036397 GO:0003676
Cpe05g00419 2224 MobiDBLite consensus disorder prediction 1180 1194 - -
Cpe05g00419 2224 Gene3D DNA Polymerase, chain B, domain 1 56 233 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00419 K02324 - csv:101208568 4063.46