Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00446 ATGTCGGGTTCTCCAGCTCCCAACTCCTCTGGCCACCCGCCGGAGCAGATCATGCTCTCTCTTAAACGCCACCTCCCTTTCTCTTCTATCAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCTCGACTCTCCACTCGTCGATCAACAACTTGACTCTATCGTAGTCAAATCTCCGCAATTGAAGCGGAAGAGTGAGGCAGCAGATTATGAAGCTGAGTCAACTGATAGAGCAGCTGGTCCTAGATTTACTGAAGTAGTTAACAGTTCCCATCAAACACCTGTATCTGTAAAAGGAGGAAAGGGAAACAAATCAAGGCTAACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTATGCAAACAATCTTACTCCAGTTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCCGACACGTTGGAGGTACAAAAAAGACGAATATATGACATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGATCAGGGGATGTTGATGACAACTATGCTGGTCTACAGGCGGAAGTAGAGAACCTTTCCATGGAGGAGAATGGATTAGATGAACAAATAAGGTGGTTATTTGTAACCGAGGAAGACATCAAGGAGTTGCCGTGTTTCCAGAATGAAACTCTTATAGCTATTAAGGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTATAGGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATAAATGGTGTGGAAGTGTCCCCAAGCTTGCCGTCAAGTTCTGGGTTTAATGAAACACCTGCAGCAACGCTAGTAACGGATGATACCAGGGGAAAGGAAGTTGAAACACGGGAGCAAGATGTAAATAGAATGTGCTCTGATCTAAATGCTTCGCAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGCGGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGCATCACTGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAGCTGAGTACATTTCATGAAGATTACAGTATTGATAATGTCAGCACACCCCAAGCCCAGAATCCACCTTCCAATAATTCACCTGATGCGCCTTCTGCTAATCCTTCTAGCAAAAGCCTTGAGAATCTTCAAGAACTCGTCGAGGCGGCTAGGAAGCTTCCGGCGAGTGAGGATCTTGACCAAGTAGCCAAAGTCATAGGCACTATGGAAGGTGACCCAACTGACAGAGGGATTACAGAGCAGACCGGA 1470 45.51 MSGSPAPNSSGHPPEQIMLSLKRHLPFSSIKPPFASPGDYHRFALDSPLVDQQLDSIVVKSPQLKRKSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEENGLDEQIRWLFVTEEDIKELPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVSPSLPSSSGFNETPAATLVTDDTRGKEVETREQDVNRMCSDLNASQDFVGGIMKIVPSAVDSDADYWLLSDADVSITDMWRTEPGVEWNELSTFHEDYSIDNVSTPQAQNPPSNNSPDAPSANPSSKSLENLQELVEAARKLPASEDLDQVAKVIGTMEGDPTDRGITEQTG 490
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 2557752 2566055 - Cp4.1LG05g04510.1 Cpe05g00446 469651
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00446 490 MobiDBLite consensus disorder prediction 320 345 - -
Cpe05g00446 490 Coils Coil 218 238 - -
Cpe05g00446 490 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Cpe05g00446 490 Gene3D - 212 305 - -
Cpe05g00446 490 MobiDBLite consensus disorder prediction 91 129 - -
Cpe05g00446 490 CDD E2F_DD 216 305 IPR032198 GO:0046983
Cpe05g00446 490 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Cpe05g00446 490 PANTHER TRANSCRIPTION FACTOR E2F 19 434 IPR015633 GO:0000978|GO:0006357
Cpe05g00446 490 MobiDBLite consensus disorder prediction 420 450 - -
Cpe05g00446 490 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Cpe05g00446 490 Pfam E2F transcription factor CC-MB domain 220 304 IPR032198 GO:0046983
Cpe05g00446 490 MobiDBLite consensus disorder prediction 109 129 - -
Cpe05g00446 490 PANTHER TRANSCRIPTION FACTOR E2FB 19 434 - -
Cpe05g00446 490 Coils Coil 156 176 - -
Cpe05g00446 490 SUPERFAMILY E2F-DP heterodimerization region 217 305 IPR037241 -
Cpe05g00446 490 MobiDBLite consensus disorder prediction 420 490 - -
Cpe05g00446 490 Gene3D - 135 207 IPR036388 -
Cpe05g00446 490 MobiDBLite consensus disorder prediction 320 336 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00446 Cpe-Chr5:2557752 Cpe19g00497 Cpe-Chr19:4261540 8.98E-152 dispersed
Cpe16g00820 Cpe-Chr16:7906566 Cpe05g00446 Cpe-Chr5:2557752 0 wgd
Cpe05g00398 Cpe-Chr5:2254187 Cpe05g00446 Cpe-Chr5:2557752 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49509 PF16421 E2F_CC-MB 7.30E-23 No_clan Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00446 K06620 - csv:101219318 763.837