Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe05g00446 | ATGTCGGGTTCTCCAGCTCCCAACTCCTCTGGCCACCCGCCGGAGCAGATCATGCTCTCTCTTAAACGCCACCTCCCTTTCTCTTCTATCAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCTCGACTCTCCACTCGTCGATCAACAACTTGACTCTATCGTAGTCAAATCTCCGCAATTGAAGCGGAAGAGTGAGGCAGCAGATTATGAAGCTGAGTCAACTGATAGAGCAGCTGGTCCTAGATTTACTGAAGTAGTTAACAGTTCCCATCAAACACCTGTATCTGTAAAAGGAGGAAAGGGAAACAAATCAAGGCTAACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTATGCAAACAATCTTACTCCAGTTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCCGACACGTTGGAGGTACAAAAAAGACGAATATATGACATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGATCAGGGGATGTTGATGACAACTATGCTGGTCTACAGGCGGAAGTAGAGAACCTTTCCATGGAGGAGAATGGATTAGATGAACAAATAAGGTGGTTATTTGTAACCGAGGAAGACATCAAGGAGTTGCCGTGTTTCCAGAATGAAACTCTTATAGCTATTAAGGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTATAGGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATAAATGGTGTGGAAGTGTCCCCAAGCTTGCCGTCAAGTTCTGGGTTTAATGAAACACCTGCAGCAACGCTAGTAACGGATGATACCAGGGGAAAGGAAGTTGAAACACGGGAGCAAGATGTAAATAGAATGTGCTCTGATCTAAATGCTTCGCAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGCGGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGCATCACTGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAGCTGAGTACATTTCATGAAGATTACAGTATTGATAATGTCAGCACACCCCAAGCCCAGAATCCACCTTCCAATAATTCACCTGATGCGCCTTCTGCTAATCCTTCTAGCAAAAGCCTTGAGAATCTTCAAGAACTCGTCGAGGCGGCTAGGAAGCTTCCGGCGAGTGAGGATCTTGACCAAGTAGCCAAAGTCATAGGCACTATGGAAGGTGACCCAACTGACAGAGGGATTACAGAGCAGACCGGA | 1470 | 45.51 | MSGSPAPNSSGHPPEQIMLSLKRHLPFSSIKPPFASPGDYHRFALDSPLVDQQLDSIVVKSPQLKRKSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEENGLDEQIRWLFVTEEDIKELPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVSPSLPSSSGFNETPAATLVTDDTRGKEVETREQDVNRMCSDLNASQDFVGGIMKIVPSAVDSDADYWLLSDADVSITDMWRTEPGVEWNELSTFHEDYSIDNVSTPQAQNPPSNNSPDAPSANPSSKSLENLQELVEAARKLPASEDLDQVAKVIGTMEGDPTDRGITEQTG | 490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2557752 | 2566055 | - | Cp4.1LG05g04510.1 | Cpe05g00446 | 469651 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe05g00446 | 490 | MobiDBLite | consensus disorder prediction | 320 | 345 | - | - | |
Cpe05g00446 | 490 | Coils | Coil | 218 | 238 | - | - | |
Cpe05g00446 | 490 | Pfam | E2F/DP family winged-helix DNA-binding domain | 142 | 205 | IPR003316 | GO:0005667|GO:0006355 | |
Cpe05g00446 | 490 | Gene3D | - | 212 | 305 | - | - | |
Cpe05g00446 | 490 | MobiDBLite | consensus disorder prediction | 91 | 129 | - | - | |
Cpe05g00446 | 490 | CDD | E2F_DD | 216 | 305 | IPR032198 | GO:0046983 | |
Cpe05g00446 | 490 | SUPERFAMILY | Winged helix DNA-binding domain | 140 | 203 | IPR036390 | - | |
Cpe05g00446 | 490 | PANTHER | TRANSCRIPTION FACTOR E2F | 19 | 434 | IPR015633 | GO:0000978|GO:0006357 | |
Cpe05g00446 | 490 | MobiDBLite | consensus disorder prediction | 420 | 450 | - | - | |
Cpe05g00446 | 490 | SMART | E2F_TDP_2 | 140 | 205 | IPR003316 | GO:0005667|GO:0006355 | |
Cpe05g00446 | 490 | Pfam | E2F transcription factor CC-MB domain | 220 | 304 | IPR032198 | GO:0046983 | |
Cpe05g00446 | 490 | MobiDBLite | consensus disorder prediction | 109 | 129 | - | - | |
Cpe05g00446 | 490 | PANTHER | TRANSCRIPTION FACTOR E2FB | 19 | 434 | - | - | |
Cpe05g00446 | 490 | Coils | Coil | 156 | 176 | - | - | |
Cpe05g00446 | 490 | SUPERFAMILY | E2F-DP heterodimerization region | 217 | 305 | IPR037241 | - | |
Cpe05g00446 | 490 | MobiDBLite | consensus disorder prediction | 420 | 490 | - | - | |
Cpe05g00446 | 490 | Gene3D | - | 135 | 207 | IPR036388 | - | |
Cpe05g00446 | 490 | MobiDBLite | consensus disorder prediction | 320 | 336 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g00446 | Cpe-Chr5:2557752 | Cpe19g00497 | Cpe-Chr19:4261540 | 8.98E-152 | dispersed | |
Cpe16g00820 | Cpe-Chr16:7906566 | Cpe05g00446 | Cpe-Chr5:2557752 | 0 | wgd | |
Cpe05g00398 | Cpe-Chr5:2254187 | Cpe05g00446 | Cpe-Chr5:2557752 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49509 | PF16421 | E2F_CC-MB | 7.30E-23 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe05g00446 | K06620 | - | csv:101219318 | 763.837 |