Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00446 ATGTCGGGTTCTCCAGCTCCCAACTCCTCTGGCCACCCGCCGGAGCAGATCATGCTCTCTCTTAAACGCCACCTCCCTTTCTCTTCTATCAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCTCGACTCTCCACTCGTCGATCAACAACTTGACTCTATCGTAGTCAAATCTCCGCAATTGAAGCGGAAGAGTGAGGCAGCAGATTATGAAGCTGAGTCAACTGATAGAGCAGCTGGTCCTAGATTTACTGAAGTAGTTAACAGTTCCCATCAAACACCTGTATCTGTAAAAGGAGGAAAGGGAAACAAATCAAGGCTAACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTATGCAAACAATCTTACTCCAGTTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCCGACACGTTGGAGGTACAAAAAAGACGAATATATGACATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGATCAGGGGATGTTGATGACAACTATGCTGGTCTACAGGCGGAAGTAGAGAACCTTTCCATGGAGGAGAATGGATTAGATGAACAAATAAGGTGGTTATTTGTAACCGAGGAAGACATCAAGGAGTTGCCGTGTTTCCAGAATGAAACTCTTATAGCTATTAAGGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTATAGGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATAAATGGTGTGGAAGTGTCCCCAAGCTTGCCGTCAAGTTCTGGGTTTAATGAAACACCTGCAGCAACGCTAGTAACGGATGATACCAGGGGAAAGGAAGTTGAAACACGGGAGCAAGATGTAAATAGAATGTGCTCTGATCTAAATGCTTCGCAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGCGGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGCATCACTGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAGCTGAGTACATTTCATGAAGATTACAGTATTGATAATGTCAGCACACCCCAAGCCCAGAATCCACCTTCCAATAATTCACCTGATGCGCCTTCTGCTAATCCTTCTAGCAAAAGCCTTGAGAATCTTCAAGAACTCGTCGAGGCGGCTAGGAAGCTTCCGGCGAGTGAGGATCTTGACCAAGTAGCCAAAGTCATAGGCACTATGGAAGGTGACCCAACTGACAGAGGGATTACAGAGCAGACCGGA 1470 45.51 MSGSPAPNSSGHPPEQIMLSLKRHLPFSSIKPPFASPGDYHRFALDSPLVDQQLDSIVVKSPQLKRKSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEENGLDEQIRWLFVTEEDIKELPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVSPSLPSSSGFNETPAATLVTDDTRGKEVETREQDVNRMCSDLNASQDFVGGIMKIVPSAVDSDADYWLLSDADVSITDMWRTEPGVEWNELSTFHEDYSIDNVSTPQAQNPPSNNSPDAPSANPSSKSLENLQELVEAARKLPASEDLDQVAKVIGTMEGDPTDRGITEQTG 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2557752 2566055 - Cp4.1LG05g04510.1 Cpe05g00446 469651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00446 490 MobiDBLite consensus disorder prediction 320 345 - -
Cpe05g00446 490 Coils Coil 218 238 - -
Cpe05g00446 490 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Cpe05g00446 490 Gene3D - 212 305 - -
Cpe05g00446 490 MobiDBLite consensus disorder prediction 91 129 - -
Cpe05g00446 490 CDD E2F_DD 216 305 IPR032198 GO:0046983
Cpe05g00446 490 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Cpe05g00446 490 PANTHER TRANSCRIPTION FACTOR E2F 19 434 IPR015633 GO:0000978|GO:0006357
Cpe05g00446 490 MobiDBLite consensus disorder prediction 420 450 - -
Cpe05g00446 490 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Cpe05g00446 490 Pfam E2F transcription factor CC-MB domain 220 304 IPR032198 GO:0046983
Cpe05g00446 490 MobiDBLite consensus disorder prediction 109 129 - -
Cpe05g00446 490 PANTHER TRANSCRIPTION FACTOR E2FB 19 434 - -
Cpe05g00446 490 Coils Coil 156 176 - -
Cpe05g00446 490 SUPERFAMILY E2F-DP heterodimerization region 217 305 IPR037241 -
Cpe05g00446 490 MobiDBLite consensus disorder prediction 420 490 - -
Cpe05g00446 490 Gene3D - 135 207 IPR036388 -
Cpe05g00446 490 MobiDBLite consensus disorder prediction 320 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00446 K06620 E2F3; transcription factor E2F3 - csv:101219318 763.837
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00446 Cpe-Chr5:2557752 Cpe19g00497 Cpe-Chr19:4261540 8.98E-152 dispersed
Cpe16g00820 Cpe-Chr16:7906566 Cpe05g00446 Cpe-Chr5:2557752 0 wgd
Cpe05g00398 Cpe-Chr5:2254187 Cpe05g00446 Cpe-Chr5:2557752 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01047 CCT,CST 3 375 E2F-DP Transcription Factor Family AT3G48160 55.0 4.5e-103 372.1
Cpe20g00223 CCT 3 200 E2F-DP Transcription Factor Family AT3G48160 61.3 1.4e-59 227.6
Cpe20g00223 CCT 21 200 E2F-DP Transcription Factor Family AT3G01330 54.4 6.8e-47 185.3
Cpe01g00344 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.3e-59 227.3
Cpe05g00446 . 21 424 E2F-DP Transcription Factor Family AT2G36010 52.8 1.6e-110 397.1
Cpe10g00310 CCT,ECH 45 476 E2F-DP Transcription Factor Family AT2G36010 53.0 3.5e-110 396.0
Cpe19g00497 CCT,ECH 41 480 E2F-DP Transcription Factor Family AT2G36010 52.2 1.7e-109 393.7
Cpe05g00398 CCT,ECH 3 371 E2F-DP Transcription Factor Family AT2G36010 54.7 3.5e-102 369.4
Cpe05g00446 . 24 431 E2F-DP Transcription Factor Family AT5G22220 53.7 1.8e-103 373.6
Cpe05g00398 CCT,ECH 33 378 E2F-DP Transcription Factor Family AT5G22220 59.3 8.6e-98 354.8
Cpe07g00370 CCT 157 354 E2F-DP Transcription Factor Family AT5G22220 54.0 2.5e-49 193.7
Cpe11g00250 CCT 156 411 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Cpe05g00398 CCT,ECH 77 345 E2F-DP Transcription Factor Family AT1G47870 51.7 1.9e-61 233.8
Cpe07g00370 CCT 153 354 E2F-DP Transcription Factor Family AT1G47870 59.4 7.3e-58 221.9
Cpe01g00344 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.3e-59 227.3
Cpe05g00446 . 24 431 E2F-DP Transcription Factor Family AT5G22220 53.7 1.8e-103 373.6
Cpe05g00398 CCT,ECH 33 378 E2F-DP Transcription Factor Family AT5G22220 59.3 8.6e-98 354.8
Cpe07g00370 CCT 157 354 E2F-DP Transcription Factor Family AT5G22220 54.0 2.5e-49 193.7
Cpe05g00446 . 21 424 E2F-DP Transcription Factor Family AT2G36010 52.8 1.6e-110 397.1
Cpe10g00310 CCT,ECH 45 476 E2F-DP Transcription Factor Family AT2G36010 53.0 3.5e-110 396.0
Cpe19g00497 CCT,ECH 41 480 E2F-DP Transcription Factor Family AT2G36010 52.2 1.7e-109 393.7
Cpe05g00398 CCT,ECH 3 371 E2F-DP Transcription Factor Family AT2G36010 54.7 3.5e-102 369.4
Cpe11g00250 CCT 156 411 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Cpe05g00398 CCT,ECH 77 345 E2F-DP Transcription Factor Family AT1G47870 51.7 1.9e-61 233.8
Cpe07g00370 CCT 153 354 E2F-DP Transcription Factor Family AT1G47870 59.4 7.3e-58 221.9
Cpe20g00223 CCT 21 200 E2F-DP Transcription Factor Family AT3G01330 54.4 6.8e-47 185.3
Cpe09g01047 CCT,CST 3 375 E2F-DP Transcription Factor Family AT3G48160 55.0 4.5e-103 372.1
Cpe20g00223 CCT 3 200 E2F-DP Transcription Factor Family AT3G48160 61.3 1.4e-59 227.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49509 PF16421 E2F_CC-MB 7.30E-23 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00446 Cpe_Chr05 FPKM 2.347216 2.17594 3.706109 2.881618 8.475727 7.076457 8.675302 3.23937 4.445065 4.072238