Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00449 ATGGCGACGTACTTTCACGGTGGTTCAGAAATCCAAGCGAGTTCTGACGGAATCCACACTCTTTACCTTATGAATCCCAATTATGTACCTTACTCTGACACCCATTCTCAAACGCCACCCAATATGTTATTTCTCAATCCATCTACCCACGCGCTTACTCCTTCCACTCTCCCTCACGCGCCGCCTTCCACTAACCACTTCGTTGGAATTCCCATCCCTGCAACCGACACTTCTCGTCCATCCTACCACGAGATCTCAGCCCTTCATTCTGTTCCAGCTCAGCGTCTTCACTACAATCTATGGACTCCTATGGACCAAATCTCCTCCGTGTCGGCCGCCACCGACTCCACCGATTTGAGCTTCCGCCGCCCCCGTACAAACCAGGGTTTGTCCTTGAGTCTCTCCTCCCAACAGTCGCTTTACCGGACGATGTCTGCGGATCAGGAGATTCAAGGAGGCAGAGGCGGTGGTGCTCCGGATATCTCGCCGACAAGTGGGGATGAAATTAGGGTGTCCGGTAATTCACCGGCGTCGGCGTCGGTGTCGGTGGTGTCGAGTGGGGTAACGGGGTCTAAGTACTTGAAAGCGGCGCAGGAACTTTTGGATGAAGTGGTTAACGTTGGCAAAGGAAATAAAACCGACAAAGGGGATAAGATGAAGATGAAGAAAGAATCAACGGCTGCGATTGCTGAACCTTCCGGCGGCGGCGCTGAAAGTACTTCCAAGCTTGTCACTGAGCTCAGTACTGCTCAAAGACAGGATCTTCAGATGAAGAAAGCTAAGCTTATTGGCATGCTCGATGAGGTGGAGCAAAAGTACAGACAATACCACCAGCAAATGCAAGCAGTGGCTTGTTCGTTCGAGCAGGCGGCCGGGTTGGGCTCGGCCAAGTGCTACGCCTCGCTCGCCTTACAAACCATTTCAAAGCAATTTCGGTGCCTAAAAGATGCAATATGTGCACAAGTTAAAGCCAGTGGCAAGAGCTTGGGGGAAGAGGATTGGTCCGGTGGCAAGATTGAAGGGTCCAGATTGAGATACGTGGACCATCATGTACGGCAGCAAAGAGCTTTGCAACAATTGGGAATGATTCAACATAACACTTGGAGACCTCAGAAAGGCTTGCCTGAACGAGCTGTTTCTGTTCTTCGTGCTTGGCTGTTTGAGCATTTCCTTCACCCATATCCAAAGGATTCGGATAAAGTTATTCTCGCGAAACAAACGGGACTCACGAGGAGCCAAGTTTCAAATTGGTTTATAAACGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAAGAAATGTACTCGGAAGAAATCAAAGAGCAAGAACAAAACAGTGACTCCCACGACATCAACAGACACAACAAAAACGAACCCAACAAACAAAACCACCAGATCATGAACGATTCTCTCACCGATCAAGTTCCCAATTCCTTACAAACCCATTCAGGCTTCAACCTCGTCCGACCATCCTCCGACATGCTCTCATGTCCCAAAAGACAAAGAACAACAAACAACCTCGAAACCCCGTCGACAAAACCTACGCTATCAAGAGACATAAACGACACAAAACATGTTCATGGAGGCGGGTTTGGTTCGTACCCGATTCATGAAATTGAGACAAGGTTCAATTCTGAGCTGTTGACGCCAAGATTTCATGCCAACGGCGTCTCGCTCACTCTTGGCCTTCCACAAACTTACCTCTCCGACCCAAACCTTCAGCTGGGGACAAGGGTTGATATCACCAATGGAGGATCTGACTTCTCCGACATCGATCCTGCCCCGGCCACCGCCTACGACGGCGTCGAAATTCAGACCACCAAACGATTTGCTGCCCAATTATTGCCTGATTTTGTCGCCTAA 1860 49.57 MATYFHGGSEIQASSDGIHTLYLMNPNYVPYSDTHSQTPPNMLFLNPSTHALTPSTLPHAPPSTNHFVGIPIPATDTSRPSYHEISALHSVPAQRLHYNLWTPMDQISSVSAATDSTDLSFRRPRTNQGLSLSLSSQQSLYRTMSADQEIQGGRGGGAPDISPTSGDEIRVSGNSPASASVSVVSSGVTGSKYLKAAQELLDEVVNVGKGNKTDKGDKMKMKKESTAAIAEPSGGGAESTSKLVTELSTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMQAVACSFEQAAGLGSAKCYASLALQTISKQFRCLKDAICAQVKASGKSLGEEDWSGGKIEGSRLRYVDHHVRQQRALQQLGMIQHNTWRPQKGLPERAVSVLRAWLFEHFLHPYPKDSDKVILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYSEEIKEQEQNSDSHDINRHNKNEPNKQNHQIMNDSLTDQVPNSLQTHSGFNLVRPSSDMLSCPKRQRTTNNLETPSTKPTLSRDINDTKHVHGGGFGSYPIHEIETRFNSELLTPRFHANGVSLTLGLPQTYLSDPNLQLGTRVDITNGGSDFSDIDPAPATAYDGVEIQTTKRFAAQLLPDFVA 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2586530 2591050 + Cp4.1LG05g04440.1 Cpe05g00449 469654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00449 619 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 583 - -
Cpe05g00449 619 SMART prehox3 182 320 IPR006563 -
Cpe05g00449 619 MobiDBLite consensus disorder prediction 484 516 - -
Cpe05g00449 619 Pfam Homeobox KN domain 385 424 IPR008422 GO:0003677|GO:0006355
Cpe05g00449 619 MobiDBLite consensus disorder prediction 437 463 - -
Cpe05g00449 619 MobiDBLite consensus disorder prediction 148 177 - -
Cpe05g00449 619 SUPERFAMILY Homeodomain-like 369 435 IPR009057 -
Cpe05g00449 619 Gene3D - 371 450 - -
Cpe05g00449 619 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 583 - -
Cpe05g00449 619 Pfam Associated with HOX 188 318 IPR006563 -
Cpe05g00449 619 MobiDBLite consensus disorder prediction 484 525 - -
Cpe05g00449 619 CDD homeodomain 368 429 IPR001356 GO:0003677
Cpe05g00449 619 ProSiteProfiles 'Homeobox' domain profile. 365 428 IPR001356 GO:0003677
Cpe05g00449 619 SMART HOX_1 368 432 IPR001356 GO:0003677
Cpe05g00449 619 Coils Coil 252 279 - -
Cpe05g00449 619 MobiDBLite consensus disorder prediction 437 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00449 Cpe-Chr5:2586530 Cpe08g00966 Cpe-Chr8:7581769 1.35E-179 dispersed
Cpe19g00580 Cpe-Chr19:4851063 Cpe05g00449 Cpe-Chr5:2586530 3.82E-70 dispersed
Cpe16g00823 Cpe-Chr16:7935654 Cpe05g00449 Cpe-Chr5:2586530 0 wgd
Cpe03g00311 Cpe-Chr3:1597464 Cpe05g00449 Cpe-Chr5:2586530 3.04E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49510 PF07526 POX 1.50E-47 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00449 - - cmax:111490715 1152.5