Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00455 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTCGTAACTGTGAGATGTGGCCATTGCACAAATCTACTCTCCGTAAACATGGGAGCTTCCCTCCAAGTACTTCCTCCTCAAGAGGGTCATAAGCAGCCGCAACTAACGAGCCCGGAGGATTCAAGCAAGGACAGAGGCTCATCATCTTCAAAATGCAGCAAAATTGGGTCACTTGAATCTGCTGAACGTGACCAACATAGAATCCCTCCAATTCGCCCACCGGAGAAAAGACAGCGAATTCCTTCTGCATACAACAGGTTCATCAAAGCGGAAATTCAAAGGATTAAGGCTAACAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTACCTCACATCCACTTAGGGCAGAAGCTGGATGGAAATAATAAGCAAAGTAATTAA 510 44.9 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCTNLLSVNMGASLQVLPPQEGHKQPQLTSPEDSSKDRGSSSSKCSKIGSLESAERDQHRIPPIRPPEKRQRIPSAYNRFIKAEIQRIKANNPDISHREAFSTAAKNWAHLPHIHLGQKLDGNNKQSN 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2635623 2639712 - Cp4.1LG05g04630.1 Cpe05g00455 469660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00455 169 MobiDBLite consensus disorder prediction 59 114 - -
Cpe05g00455 169 Pfam YABBY protein 7 158 IPR006780 GO:0007275
Cpe05g00455 169 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 167 - -
Cpe05g00455 169 Gene3D High mobility group box domain 95 156 IPR036910 -
Cpe05g00455 169 MobiDBLite consensus disorder prediction 91 108 - -
Cpe05g00455 169 MobiDBLite consensus disorder prediction 59 90 - -
Cpe05g00455 169 SUPERFAMILY HMG-box 104 153 IPR036910 -
Cpe05g00455 169 PANTHER PROTEIN YABBY 6-RELATED 6 167 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01191 Cpe-Chr4:10087072 Cpe05g00455 Cpe-Chr5:2635623 6.15E-45 dispersed
Cpe05g00455 Cpe-Chr5:2635623 Cpe11g01064 Cpe-Chr11:8932872 7.45E-61 dispersed
Cpe16g00831 Cpe-Chr16:7999125 Cpe05g00455 Cpe-Chr5:2635623 2.30E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49511 PF04690 YABBY 5.70E-70 CL0114 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00455 K25796 - csv:101222154 273.478