Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00456 ATGGCGGATATTAGAAAATGGTTCATGAAAGCGCACGATAAAGACAATGGCAGTGCGTCAAAGCATGCAAAACCTGATTCAAGCAGTAATGAGAAATCCGCCGCAGCTGAACTACAGTCCGGAAAAGCAGAGCTAAGTGGTGGGGAAAGTACTGGCAGAAGGATAACTAGCAAGTATTTTGCCTCAGAAAAGCAGAAGTCTAAGGATACAACAGAAACAGAGGAACTCCCTATCAAACGGAAGTCTCCACAGGATGCTAAGGAGTCACCAGCCAAAAGAAGGTCCCAAAAGGATAGTAAGGAATCATTGAAAGTTCCACCCCTACAAAAATTAAACAAAATTGATGACAATGATGATGATGCTGTTATTTCAAGTTCTAGAAAGAACTTGTCTGATGTCACTCCCAATAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCGGTAAAAATTGAAGAGAGTGATGATGAGGAAGCTGAGGGCACTGAGTCTTCTCGGAAGCAGCCTAGTGGAAGGGGTAGGGGGGGCAGAGGTTCATCTGCTGCAACCGTTGGTGGTAGAGGCAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGAGCTCCTGACTGTTTAGCCGGTTTAACTTTTGTAATCAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGTAGAATAACTGGATCCATCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCGAAAGAGCTGGGAACTGCTTTTCTCACTGAGGATGGCTTATTTGACATTATCCGTGCATCAGGCACAAAAGCTCCTCCAAGGCAAGATTCTAAAAAATCTGTGGTTAAGTCCGTGGAATCTCCAACAGGGAAAAGTTCCCTGAAAGTACAAGCAAAGACATGCAAAGATTTGTCTGCTGGTGCTGGTGCTTCACCTGCTAAGCAAAAACGCCGAACAGTTGAATTTTCTTCCCTAACATGGACAGAAAAATATAAGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCGCTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACGAGAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCAATCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAGTTGGTCAGCCGGATGCTTGGTTATGAGGCTATAGAGGTAAATGCCAGTGACAATCGGGGTAAATCAGATGCAAAAATTCAAAAGGGAATCAGCGGAAGCAATGCAAATACTATAAAGGAGCTTATCAGCAATTCATCTTTGCATTTCAGAACGAATCAGCCAAAACATCCCAAAACTGTGTTGATTATGGATGAAGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTCGCTGATCTTATTGCAAGCATTAAAAGCTCCAAAATTCCAATTATCTGCATCTGTAATGACCGCTACAGCCAGAAGTTGAAAAGCCTTGTGAACTATTGTCTGATTCTCAGTTTTAGAAAACCTACAAAACAACAGATGGCAAAAAGATTGAGTCAAGTTGCAAATGCAGAAGGACTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTGAATGGGGATATACGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCAATGTCTGTTATTAAATATGATGATATTCGCCAACGACTTCTGGGCAGTATGAAAGATGAAGACATCTCGCCGTTCACTGCTGTTGATAAGCTGTTTGGTTTTAATTCTGGGAAGTTGAGGATGGATGAACGTATAGACCTCAGTATGAGTGATATGGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGACCAAGCTCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGATTTGATGGCCCGTGCAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGCTCAATTGCTTCTTGTGTAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTAGTGCATGGCTGGGAAAAAATTCTACTTTTGGAAAAAATATGCGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGCGAGTCCTGTTCTAGGAGGGAACACCTACGAGTTGAGAACCTTACCCTATTTCTGAAGAGGTTGACTGAACCACTGCACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTTGTAGATTTTATGAGTCTATATTCGATCAGTCAAGAGGATTTTGATACTGTTATGGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGCGTGGCCCCTGCTGTCAAAGCTGCTCTAACAAAGGCATATAAAGAAGCAAGAAAGACACAGATGGTGCGGACTGCAGACCTCATTACACTTCCTGGAATTAAAAAGGCCCCTAAGAAGCGAATTGCAGCAATGCTAGAACCGGCTGAGGATACAGTCGAGGGCAATGGTGGAGACGCGTTGGCAGAAAGTGACGATGAGAACTCTTTGGACAACGACGACACAGAAGACTCAACAAACGCTGAGAAGAAGCTGCAACTGGAACTTCAAAACTTGAAGAAGGAAGGAATGGAAGTGCAGCTAGATTTGAAAGGTGTGGAGAATTCAAACGCCAAGAAACCTGGTGGCAGAGGAAGAGGAGGTGGTTCCCAGGCTTCAGAGAAGAAAGGTGGGGGGCGAGGTTCAGGATCTGCCACAAAGAGGAAAAGATGA 2931 43.02 MADIRKWFMKAHDKDNGSASKHAKPDSSSNEKSAAAELQSGKAELSGGESTGRRITSKYFASEKQKSKDTTETEELPIKRKSPQDAKESPAKRRSQKDSKESLKVPPLQKLNKIDDNDDDAVISSSRKNLSDVTPNKKLKSGSGKGITQKPVKIEESDDEEAEGTESSRKQPSGRGRGGRGSSAATVGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSISKKTNYLLCDEDIGGRKSSKAKELGTAFLTEDGLFDIIRASGTKAPPRQDSKKSVVKSVESPTGKSSLKVQAKTCKDLSAGAGASPAKQKRRTVEFSSLTWTEKYKPKVPNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGPGIGKTTSAKLVSRMLGYEAIEVNASDNRGKSDAKIQKGISGSNANTIKELISNSSLHFRTNQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLSQVANAEGLQVNEIALEELAERVNGDIRMALNQLQYLSLSMSVIKYDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDMDLVPLLIQENYINYRPSSVSKDDNGIKRMDLMARAAESIADGDIINVQIRRHRQWQLSQSSSIASCVIPASLLHGQRETLEQGERNFNRFSAWLGKNSTFGKNMRLLEDLHVHILASRESCSRREHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVDFMSLYSISQEDFDTVMELSKFQGRKNPLDGVAPAVKAALTKAYKEARKTQMVRTADLITLPGIKKAPKKRIAAMLEPAEDTVEGNGGDALAESDDENSLDNDDTEDSTNAEKKLQLELQNLKKEGMEVQLDLKGVENSNAKKPGGRGRGGGSQASEKKGGGRGSGSATKRKR 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2642988 2657536 + Cp4.1LG05g04590.1 Cpe05g00456 469661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00456 976 Coils Coil 908 942 - -
Cpe05g00456 976 MobiDBLite consensus disorder prediction 126 143 - -
Cpe05g00456 976 PIRSF RFC1 1 947 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Cpe05g00456 976 Gene3D - 618 728 - -
Cpe05g00456 976 ProSiteProfiles BRCT domain profile. 219 297 IPR001357 -
Cpe05g00456 976 SMART AAA_5 409 547 IPR003593 -
Cpe05g00456 976 CDD HLD_clamp_RFC 546 604 - -
Cpe05g00456 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 606 IPR027417 -
Cpe05g00456 976 SMART BRCT_7 221 299 IPR001357 -
Cpe05g00456 976 MobiDBLite consensus disorder prediction 1 28 - -
Cpe05g00456 976 MobiDBLite consensus disorder prediction 1 220 - -
Cpe05g00456 976 MobiDBLite consensus disorder prediction 111 125 - -
Cpe05g00456 976 MobiDBLite consensus disorder prediction 909 934 - -
Cpe05g00456 976 MobiDBLite consensus disorder prediction 151 170 - -
Cpe05g00456 976 SUPERFAMILY BRCT domain 219 298 IPR036420 -
Cpe05g00456 976 Pfam ATPase family associated with various cellular activities (AAA) 413 525 IPR003959 GO:0005524|GO:0016887
Cpe05g00456 976 MobiDBLite consensus disorder prediction 300 321 - -
Cpe05g00456 976 MobiDBLite consensus disorder prediction 203 218 - -
Cpe05g00456 976 MobiDBLite consensus disorder prediction 59 104 - -
Cpe05g00456 976 CDD BRCT_RFC1 219 297 - -
Cpe05g00456 976 SUPERFAMILY post-AAA+ oligomerization domain-like 617 762 IPR008921 GO:0003677|GO:0006260
Cpe05g00456 976 PANTHER REPLICATION FACTOR C SUBUNIT 1 18 946 - -
Cpe05g00456 976 Pfam BRCA1 C Terminus (BRCT) domain 221 296 IPR001357 -
Cpe05g00456 976 CDD AAA 406 546 - -
Cpe05g00456 976 MobiDBLite consensus disorder prediction 44 58 - -
Cpe05g00456 976 MobiDBLite consensus disorder prediction 893 908 - -
Cpe05g00456 976 Pfam Replication factor RFC1 C terminal domain 686 848 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Cpe05g00456 976 MobiDBLite consensus disorder prediction 880 976 - -
Cpe05g00456 976 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 18 946 - -
Cpe05g00456 976 Gene3D BRCT domain 196 298 IPR036420 -
Cpe05g00456 976 Gene3D - 357 545 IPR027417 -
Cpe05g00456 976 Gene3D - 546 616 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00456 Cpe-Chr5:2642988 Cpe14g00835 Cpe-Chr14:6781291 2.21E-13 dispersed
Cpe02g00547 Cpe-Chr2:3261212 Cpe05g00456 Cpe-Chr5:2642988 4.47E-09 transposed
Cpe08g00388 Cpe-Chr8:2433571 Cpe05g00456 Cpe-Chr5:2642988 4.37E-14 transposed
Cpe16g00832 Cpe-Chr16:8005395 Cpe05g00456 Cpe-Chr5:2642988 4.07E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00456 K10754 - csv:101204361 1514.98