Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe05g00456 | ATGGCGGATATTAGAAAATGGTTCATGAAAGCGCACGATAAAGACAATGGCAGTGCGTCAAAGCATGCAAAACCTGATTCAAGCAGTAATGAGAAATCCGCCGCAGCTGAACTACAGTCCGGAAAAGCAGAGCTAAGTGGTGGGGAAAGTACTGGCAGAAGGATAACTAGCAAGTATTTTGCCTCAGAAAAGCAGAAGTCTAAGGATACAACAGAAACAGAGGAACTCCCTATCAAACGGAAGTCTCCACAGGATGCTAAGGAGTCACCAGCCAAAAGAAGGTCCCAAAAGGATAGTAAGGAATCATTGAAAGTTCCACCCCTACAAAAATTAAACAAAATTGATGACAATGATGATGATGCTGTTATTTCAAGTTCTAGAAAGAACTTGTCTGATGTCACTCCCAATAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCGGTAAAAATTGAAGAGAGTGATGATGAGGAAGCTGAGGGCACTGAGTCTTCTCGGAAGCAGCCTAGTGGAAGGGGTAGGGGGGGCAGAGGTTCATCTGCTGCAACCGTTGGTGGTAGAGGCAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGAGCTCCTGACTGTTTAGCCGGTTTAACTTTTGTAATCAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGTAGAATAACTGGATCCATCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCGAAAGAGCTGGGAACTGCTTTTCTCACTGAGGATGGCTTATTTGACATTATCCGTGCATCAGGCACAAAAGCTCCTCCAAGGCAAGATTCTAAAAAATCTGTGGTTAAGTCCGTGGAATCTCCAACAGGGAAAAGTTCCCTGAAAGTACAAGCAAAGACATGCAAAGATTTGTCTGCTGGTGCTGGTGCTTCACCTGCTAAGCAAAAACGCCGAACAGTTGAATTTTCTTCCCTAACATGGACAGAAAAATATAAGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCGCTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACGAGAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCAATCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAGTTGGTCAGCCGGATGCTTGGTTATGAGGCTATAGAGGTAAATGCCAGTGACAATCGGGGTAAATCAGATGCAAAAATTCAAAAGGGAATCAGCGGAAGCAATGCAAATACTATAAAGGAGCTTATCAGCAATTCATCTTTGCATTTCAGAACGAATCAGCCAAAACATCCCAAAACTGTGTTGATTATGGATGAAGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTCGCTGATCTTATTGCAAGCATTAAAAGCTCCAAAATTCCAATTATCTGCATCTGTAATGACCGCTACAGCCAGAAGTTGAAAAGCCTTGTGAACTATTGTCTGATTCTCAGTTTTAGAAAACCTACAAAACAACAGATGGCAAAAAGATTGAGTCAAGTTGCAAATGCAGAAGGACTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTGAATGGGGATATACGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCAATGTCTGTTATTAAATATGATGATATTCGCCAACGACTTCTGGGCAGTATGAAAGATGAAGACATCTCGCCGTTCACTGCTGTTGATAAGCTGTTTGGTTTTAATTCTGGGAAGTTGAGGATGGATGAACGTATAGACCTCAGTATGAGTGATATGGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGACCAAGCTCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGATTTGATGGCCCGTGCAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGCTCAATTGCTTCTTGTGTAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTAGTGCATGGCTGGGAAAAAATTCTACTTTTGGAAAAAATATGCGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGCGAGTCCTGTTCTAGGAGGGAACACCTACGAGTTGAGAACCTTACCCTATTTCTGAAGAGGTTGACTGAACCACTGCACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTTGTAGATTTTATGAGTCTATATTCGATCAGTCAAGAGGATTTTGATACTGTTATGGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGCGTGGCCCCTGCTGTCAAAGCTGCTCTAACAAAGGCATATAAAGAAGCAAGAAAGACACAGATGGTGCGGACTGCAGACCTCATTACACTTCCTGGAATTAAAAAGGCCCCTAAGAAGCGAATTGCAGCAATGCTAGAACCGGCTGAGGATACAGTCGAGGGCAATGGTGGAGACGCGTTGGCAGAAAGTGACGATGAGAACTCTTTGGACAACGACGACACAGAAGACTCAACAAACGCTGAGAAGAAGCTGCAACTGGAACTTCAAAACTTGAAGAAGGAAGGAATGGAAGTGCAGCTAGATTTGAAAGGTGTGGAGAATTCAAACGCCAAGAAACCTGGTGGCAGAGGAAGAGGAGGTGGTTCCCAGGCTTCAGAGAAGAAAGGTGGGGGGCGAGGTTCAGGATCTGCCACAAAGAGGAAAAGATGA | 2931 | 43.02 | MADIRKWFMKAHDKDNGSASKHAKPDSSSNEKSAAAELQSGKAELSGGESTGRRITSKYFASEKQKSKDTTETEELPIKRKSPQDAKESPAKRRSQKDSKESLKVPPLQKLNKIDDNDDDAVISSSRKNLSDVTPNKKLKSGSGKGITQKPVKIEESDDEEAEGTESSRKQPSGRGRGGRGSSAATVGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSISKKTNYLLCDEDIGGRKSSKAKELGTAFLTEDGLFDIIRASGTKAPPRQDSKKSVVKSVESPTGKSSLKVQAKTCKDLSAGAGASPAKQKRRTVEFSSLTWTEKYKPKVPNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGPGIGKTTSAKLVSRMLGYEAIEVNASDNRGKSDAKIQKGISGSNANTIKELISNSSLHFRTNQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLSQVANAEGLQVNEIALEELAERVNGDIRMALNQLQYLSLSMSVIKYDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDMDLVPLLIQENYINYRPSSVSKDDNGIKRMDLMARAAESIADGDIINVQIRRHRQWQLSQSSSIASCVIPASLLHGQRETLEQGERNFNRFSAWLGKNSTFGKNMRLLEDLHVHILASRESCSRREHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVDFMSLYSISQEDFDTVMELSKFQGRKNPLDGVAPAVKAALTKAYKEARKTQMVRTADLITLPGIKKAPKKRIAAMLEPAEDTVEGNGGDALAESDDENSLDNDDTEDSTNAEKKLQLELQNLKKEGMEVQLDLKGVENSNAKKPGGRGRGGGSQASEKKGGGRGSGSATKRKR | 976 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2642988 | 2657536 | + | Cp4.1LG05g04590.1 | Cpe05g00456 | 469661 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe05g00456 | 976 | Coils | Coil | 908 | 942 | - | - | |
Cpe05g00456 | 976 | MobiDBLite | consensus disorder prediction | 126 | 143 | - | - | |
Cpe05g00456 | 976 | PIRSF | RFC1 | 1 | 947 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
Cpe05g00456 | 976 | Gene3D | - | 618 | 728 | - | - | |
Cpe05g00456 | 976 | ProSiteProfiles | BRCT domain profile. | 219 | 297 | IPR001357 | - | |
Cpe05g00456 | 976 | SMART | AAA_5 | 409 | 547 | IPR003593 | - | |
Cpe05g00456 | 976 | CDD | HLD_clamp_RFC | 546 | 604 | - | - | |
Cpe05g00456 | 976 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 357 | 606 | IPR027417 | - | |
Cpe05g00456 | 976 | SMART | BRCT_7 | 221 | 299 | IPR001357 | - | |
Cpe05g00456 | 976 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cpe05g00456 | 976 | MobiDBLite | consensus disorder prediction | 1 | 220 | - | - | |
Cpe05g00456 | 976 | MobiDBLite | consensus disorder prediction | 111 | 125 | - | - | |
Cpe05g00456 | 976 | MobiDBLite | consensus disorder prediction | 909 | 934 | - | - | |
Cpe05g00456 | 976 | MobiDBLite | consensus disorder prediction | 151 | 170 | - | - | |
Cpe05g00456 | 976 | SUPERFAMILY | BRCT domain | 219 | 298 | IPR036420 | - | |
Cpe05g00456 | 976 | Pfam | ATPase family associated with various cellular activities (AAA) | 413 | 525 | IPR003959 | GO:0005524|GO:0016887 | |
Cpe05g00456 | 976 | MobiDBLite | consensus disorder prediction | 300 | 321 | - | - | |
Cpe05g00456 | 976 | MobiDBLite | consensus disorder prediction | 203 | 218 | - | - | |
Cpe05g00456 | 976 | MobiDBLite | consensus disorder prediction | 59 | 104 | - | - | |
Cpe05g00456 | 976 | CDD | BRCT_RFC1 | 219 | 297 | - | - | |
Cpe05g00456 | 976 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 617 | 762 | IPR008921 | GO:0003677|GO:0006260 | |
Cpe05g00456 | 976 | PANTHER | REPLICATION FACTOR C SUBUNIT 1 | 18 | 946 | - | - | |
Cpe05g00456 | 976 | Pfam | BRCA1 C Terminus (BRCT) domain | 221 | 296 | IPR001357 | - | |
Cpe05g00456 | 976 | CDD | AAA | 406 | 546 | - | - | |
Cpe05g00456 | 976 | MobiDBLite | consensus disorder prediction | 44 | 58 | - | - | |
Cpe05g00456 | 976 | MobiDBLite | consensus disorder prediction | 893 | 908 | - | - | |
Cpe05g00456 | 976 | Pfam | Replication factor RFC1 C terminal domain | 686 | 848 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
Cpe05g00456 | 976 | MobiDBLite | consensus disorder prediction | 880 | 976 | - | - | |
Cpe05g00456 | 976 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 18 | 946 | - | - | |
Cpe05g00456 | 976 | Gene3D | BRCT domain | 196 | 298 | IPR036420 | - | |
Cpe05g00456 | 976 | Gene3D | - | 357 | 545 | IPR027417 | - | |
Cpe05g00456 | 976 | Gene3D | - | 546 | 616 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g00456 | Cpe-Chr5:2642988 | Cpe14g00835 | Cpe-Chr14:6781291 | 2.21E-13 | dispersed | |
Cpe02g00547 | Cpe-Chr2:3261212 | Cpe05g00456 | Cpe-Chr5:2642988 | 4.47E-09 | transposed | |
Cpe08g00388 | Cpe-Chr8:2433571 | Cpe05g00456 | Cpe-Chr5:2642988 | 4.37E-14 | transposed | |
Cpe16g00832 | Cpe-Chr16:8005395 | Cpe05g00456 | Cpe-Chr5:2642988 | 4.07E-13 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe05g00456 | K10754 | - | csv:101204361 | 1514.98 |