Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00476 ATGGCTTCTTCGGGAATCTCTACTGAAAGCGCCGAATTGTCTGATGCCGTTCAAATACTGGAAGTTTGCAACCAGATCGAAATGGGAAAGAAGGTAGAGATTCAAGGAACAGGTCATGGGAGTCATGATGGGGTTTGTGCAATATGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCGTATAATAAGAATCCGACGTGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCCTGCTTCTGAGAGCTTCATGGTATATACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTACGAGGATGACGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTATAAAAAAAGATGATTCAAAAGATAAAACAGGTCGACGAGCTAAAAGAGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACATCTAGCTAGGTTTGGGCGGAAGTGA 732 46.45 MASSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYIPLIVEDREETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRSTVPVHAGASSSREPIKKDDSKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2780316 2783373 - Cp4.1LG05g04790.1 Cpe05g00476 469681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00476 243 ProSiteProfiles Zinc finger RING-type profile. 46 89 IPR001841 -
Cpe05g00476 243 SUPERFAMILY RING/U-box 40 96 - -
Cpe05g00476 243 SMART ring_2 46 88 IPR001841 -
Cpe05g00476 243 MobiDBLite consensus disorder prediction 199 243 - -
Cpe05g00476 243 MobiDBLite consensus disorder prediction 180 243 - -
Cpe05g00476 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 94 IPR013083 -
Cpe05g00476 243 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Cpe05g00476 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 243 - -
Cpe05g00476 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 243 - -
Cpe05g00476 243 Pfam Ring finger domain 46 89 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00476 Cpe16g00858 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00858 Cpe-Chr16:8157994 Cpe05g00476 Cpe-Chr5:2780316 7.37E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00476 - - mcha:111020607 375.17