Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00477 ATGTGGTCCGCCGCCGCTGCTTCTCAAAGGTCTCTTAATTACGGCCTTGGATCAGAAATGAGCATGGTTGGCCTCCGAGATGTGTTTGTCGTTGCACCGGCTTCCTCTTTCAACCCTAATCCTCACCACCACGACAATAACCTCCTCTCAGATCCTCATTCCCTCGCTGTCTCTAACCCCGCCACCGCTCTCGGCGTCGGCGTTATTCCGCTGCTCACCGCCGGGCCCTGCCTCGGCGTTGAGGAGGATAATTTATTGAGTAATCGGAGTAGTAACAGAGGCGGAGGGATTCAGTTATGGCAACAGAATCATTATTTGAAGAAAATGCCATCGTCTCTGGATCATCACCTCCATAATCCCTCCGCCGCTAACAATGGACTTCTCGACGACGGAATCGGTATCACCGGCGGTTTAGCTTCGTCGTCGTCGGCGACGACCACGTGTCAGGACTGTGGTAACCAAGCGAAGAAGGATTGTAGTCATAGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCACTACTCACGTGAAGAGCACGTGGGTTCCTGCAGCGCGACGGCGAGAGCGGCAACTAATGGGGGTAACTGCTAACGCCGCTGCTGGTTCATCCGCCTCCACCTCTGGCGCGAAGAAACCGCGACTCATCGCTTCGCAAACCACTTCTCGAACTTCCACTTCCAATACGACGCCGCCGCGTAGCCTCGATACGAGCTCCAGCCATCAAGATGCTGGTTTTCCAGAGGCATTACCAGGACAAGTACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTCACGGCGGTGGACGACGGCGACGACGAATACGCTTATCAAGCGGTGGTTAAAATCGGCGGACATATCTTCAAAGGTTTTTTGTACGATCAAGGCGTTGAACCAGGAGATGAGTTTCCGAATGTTTCGGAATTGCATTTAGGCGACGGCGGTGGAATAACCAGAAACAATCGGAATGGCATTTCTTCTTCTCCGCTTGTTGATCCATCGGACGTCTACAATGCTGCCGCCACTGGCGGCGGCGCTCCATGTTTTCTCGGCGGTTCAAATTACGGTAATCAAATCAGCTGA 1089 53.63 MWSAAAASQRSLNYGLGSEMSMVGLRDVFVVAPASSFNPNPHHHDNNLLSDPHSLAVSNPATALGVGVIPLLTAGPCLGVEEDNLLSNRSSNRGGGIQLWQQNHYLKKMPSSLDHHLHNPSAANNGLLDDGIGITGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCTTHVKSTWVPAARRRERQLMGVTANAAAGSSASTSGAKKPRLIASQTTSRTSTSNTTPPRSLDTSSSHQDAGFPEALPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHIFKGFLYDQGVEPGDEFPNVSELHLGDGGGITRNNRNGISSSPLVDPSDVYNAAATGGGAPCFLGGSNYGNQIS 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2788710 2791109 - Cp4.1LG05g04760.1 Cpe05g00477 469682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00477 362 MobiDBLite consensus disorder prediction 199 246 - -
Cpe05g00477 362 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 147 189 IPR006510 -
Cpe05g00477 362 MobiDBLite consensus disorder prediction 197 252 - -
Cpe05g00477 362 Pfam Domain of unknown function (DUF702) 145 300 - -
Cpe05g00477 362 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 361 IPR007818 GO:0003700|GO:0006355
Cpe05g00477 362 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 252 299 IPR006511 -
Cpe05g00477 362 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 361 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00477 Cpe16g00860 CCT
Cpe04g00890 Cpe05g00477 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00477 Cpe-Chr5:2788710 Cpe09g00448 Cpe-Chr9:2889169 1.10E-64 dispersed
Cpe16g00860 Cpe-Chr16:8171896 Cpe05g00477 Cpe-Chr5:2788710 0 wgd
Cpe03g00357 Cpe-Chr3:1888372 Cpe05g00477 Cpe-Chr5:2788710 7.17E-60 wgd
Cpe04g00890 Cpe-Chr4:8146991 Cpe05g00477 Cpe-Chr5:2788710 1.38E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49512 PF05142 DUF702 3.40E-62 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00477 - - cpep:111777082 558.525