Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00493 ATGGGATACATTCCCACCGTCTTCTTCCTGAATCCAGCGCTTCGGATTTCCTCAATTTTCTCTCCAGGTATGCAGTTCAAGTCTAAAAGTGTGAATCAAGTGGAATCTGAACCACCGAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCTCCGTCAGCAACAGGAGGGAATGTTTATGGGCAAGGTCAGCACAACAATCAGCATGCTGTTTCTACTGCACCTAGAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCAATATCAGGATCCTTATTATGCTGGACTTATGGCTGCATATGGGCATCAACCTATGGGTTATCCTCCTTTTATTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGGCACAGGAGCCAGTTTTTGTGAATGCCAAACAGTATCAAGGAATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTACCGGTGGACGTTTTGCCAAGAAAAATGAAGCTAAATCTTTGAGCTCTACTATGAAGAGCAAGGAATCTGGTTCTGGTCAAGCTATATCGTCTAGTTCGTCTGGTTCTGAGGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCAATAGTCAACAAGAAGCAAGAGCCCAGTTGCATGAGTCATATGAAGCTCTAGCTTCCAAGCTTCTTCATATGCTTTACTCTCTGGCGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCCGCACAGAGGCGTCTTGCAATCAAATGAACCACCTGGTTGCGAAAATACGGGGTACCCCTTG 963 46.73 MGYIPTVFFLNPALRISSIFSPGMQFKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEALASKLLHMLYSLAREVKMETARDSNEEVSQKIRPHRGVLQSNEPPGCENTGYPL 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2909784 2914087 - Cp4.1LG05g04960.1 Cpe05g00493 469698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00493 321 MobiDBLite consensus disorder prediction 286 300 - -
Cpe05g00493 321 ProSitePatterns NF-YA/HAP2 subunit signature. 154 174 IPR018362 GO:0003677|GO:0016602
Cpe05g00493 321 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 61 293 IPR001289 GO:0003700|GO:0006355
Cpe05g00493 321 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 151 206 IPR001289 GO:0003700|GO:0006355
Cpe05g00493 321 SMART cbf3 148 209 IPR001289 GO:0003700|GO:0006355
Cpe05g00493 321 MobiDBLite consensus disorder prediction 189 241 - -
Cpe05g00493 321 MobiDBLite consensus disorder prediction 286 321 - -
Cpe05g00493 321 PRINTS CCAAT-binding transcription factor subunit B signature 183 206 IPR001289 GO:0003700|GO:0006355
Cpe05g00493 321 PRINTS CCAAT-binding transcription factor subunit B signature 152 174 IPR001289 GO:0003700|GO:0006355
Cpe05g00493 321 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 61 293 - -
Cpe05g00493 321 MobiDBLite consensus disorder prediction 211 241 - -
Cpe05g00493 321 MobiDBLite consensus disorder prediction 189 203 - -
Cpe05g00493 321 Gene3D - 149 211 - -
Cpe05g00493 321 ProSiteProfiles NF-YA/HAP2 family profile. 149 209 IPR001289 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00493 Cpe16g00877 CCT
Cpe04g00917 Cpe05g00493 CCT
Cpe04g00917 Cpe05g00493 ECH
Cpe05g00493 Cpe16g00877 ECH
Cpe05g00493 Cpe18g00169 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00493 Cpe-Chr5:2909784 Cpe10g00052 Cpe-Chr10:342802 4.14E-38 dispersed
Cpe12g00827 Cpe-Chr12:7365749 Cpe05g00493 Cpe-Chr5:2909784 3.79E-40 wgd
Cpe16g00877 Cpe-Chr16:8298473 Cpe05g00493 Cpe-Chr5:2909784 3.08E-133 wgd
Cpe17g00690 Cpe-Chr17:5519163 Cpe05g00493 Cpe-Chr5:2909784 2.92E-47 wgd
Cpe18g00169 Cpe-Chr18:3291582 Cpe05g00493 Cpe-Chr5:2909784 1.56E-80 wgd
Cpe04g00917 Cpe-Chr4:8349277 Cpe05g00493 Cpe-Chr5:2909784 8.53E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49515 PF02045 CBFB_NFYA 2.10E-26 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00493 K08064 - csv:101212961 387.882