Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00504 ATGAATACCAGATTTTCTCTTCGAGCCCATTCCAGCCTCACCGTCATCACCCACACAAGCAACCACTGCAATGAGAAGCCTCACAATGTCATCTGTCCACTTCATTCTCTGCCATGGAGAGCCCTTTTTGCCCTTCAAAAAATCAGTGCACTCGCCATCCTCAGTAAAACTAGGCTCATCTTCTTCACTCGTGTTACTGTTGTTTGTGACGCCACCAGAGGCAATTGCTTTCCCTTTAGTGAAAATAAAGGAAAACTGAGATTCGACTCGCAGCCAGGGCACTCACCAGTTCCAGTTCGATCATCCCGCGGGTTTTCTGCTGGGGTTTATGCCGCTCTTTCCCCTTTGTTCCAAAACCCTATACTCAATTCCTCAAATTCAAGTGATTGCTTCTCAAGTCTAGGCAAGGCAAGGATTTGGAGCTTCCATTTTGCAAGAATTCGAACCTCATTTCTCGATCATCCGATCAAGATGCCACCGAACGATGACATTGTCTTTACTTCGCGCGCTACGCTTAGAGTTCCACACCTTCCTCCGTCTAACTCACATTCTTCTTTCAGATTCTGTTTCAGAAATATGGCTTCGCAGTTCGATCAATCCTGTCACTCAATTTTTCAGTTCATTGATTCGGTTAAGAGAGGGTCGAAATTGACTAATTTCAACCACAGTATTCCCCATTTCTGGCCACCATCGCTTCCCTTTTGGGGTTCAAAGAAGATAACTCAGCGAGGAAATTCGGTTAGTCGATGGGCAAGCGGGAGTTGTGGGGCAATGTTTGTTGATAAATCTAGTTTAATTTGTTCGGCGTCATTGTCGCTAATTCAATCTGACGGATCGAATAAGGCTGAGTCTGGAACTCGTGCGGAGCATTCAGGCAGGCAACGGGGGATGGATGACAAAAGTACGGGGTTGGTTGGAAAATCATCTCTTCTTTGTTCAGCTTCATTGGCTTTGGCTCGGTCTGACGAGGCGAGTCAGCCTAGTGGTTCGGAGAGTAAGGAATCGCCTCAAAAGGGGTATTCAGCTGGTCGGCCGGATGAGGAGAGAGTGCTAATCAGTGAGGTTCTCGTGAGAAATAAGGACGGTGAGGAGCTAGAGAGGAAGGACCTCGAGATGGAGGTTTTGACCGCCTTGAAGGCGAGCAGACCCAATTCTGCGCTCACTGTGCGCGAGGTTCAAGAAGATGTGCACAGGATTATCAATAGTGGGTATTTCTACTCGTGCATACCCGTTGCAGTTGATACCAGAGATGGAATAAGATTAATATTTCAGGTAGAACCAAATCAAGAGTTTCAGGGGCTGGTATGTGAAGGTGCTAATGTCCTTCCCGCAAAGTTTCTGGAGGAAGCTTTTCGCGATGGCTATGGAAAAGTTGTCAATCTCAGGCATTTAGATGAAGTAATATCATCCATCAATAGCTGGTATGGTGAACGAGGCCTTTTTGGCAGGGTATCAGCTGTAGATATTCTATCTGGAGGCATTCTTAGTTTGCAAGTTTCTGAAGCTGAAGTAAATAACATTTCCATCCGATTTCTTGACAAAAAGACTGGGGAGCCAATTTCAGGAAACACAAGACCTGACACAATACTCCGGCAACTTACTACCAAGAAAGGACAGGTCTACAGTATGCTTCAAGGCAAAAGAGATGCAGAGACTGTCTTAACCATGGGGATCATGGAAGATGTCAGCATTATTCCCCAACCTGCTGCTGATGCCGGAAAGGTTGACTTACTGATGAATGTTGTTGAGCGTCCAAGTGGAGGTTTCTCTGCAGGTGGTGGTCTATCATGCGGGACCACTGGTGGTGCTGGCCCTTTAGCAGCCCTTATTGGAAGCTTTGCATATTCCCACAGAAATCTTTTTGGGAGGAATCAGAAGCTCCATGTCTCCTTGGAGAGGGGTCAAGTTGATTTCACTTTTCGCATAAACTACACAGACCCGTGGATTGAAGGAGATGATAAGAGGACATCACGAACGATAATGGTTCAGAACTCAAGGACTCCAGGTACACTTGTCCATGGTGGTAGCAACCTGACCATTGGTCGGGTTACAGCTGGTTTGGAATTCAACCGCCCAATCAGGCCGAAGTGGAGTGGAACGGGAGGACTTTATTTCCAGCGTGCTGGTGCTCGAGATGAGCAAGGAAATCCTATCATTATGGATACCATCAAATGTCCTCTCACTGCAAGTGGCAATGCTGACGACAATATGTTACTGGCTAAACTTGAGAGTGTTTACACTGGTTCTGGGGACCATGGGTCTTCAATGTTTGTTCTCAGCATGGAACAGGGGCTTCCCTTTTTGCCTGAATGGCTATGTTTTAATAGAGTGAATGCTCGTGCCAGAACTGGCGTGGAAGTTGGTCCCTCTCAGTTCCTTTTGAGTTTATCTGGAGGTCATGTAGTTGGCAAATTCTGCCCACACGAAGCATTTGCCATTGGGGGAACAAACAGTGTAAGAGGATATGAAGAAGGTGCTGTAGGCTCTGGTCGATCTTATGCTGTTGGATGTGGAGAGATCTCTTTCCCCTTGTTTGCCCCAGTAGAAGGAGTTCTTTTTGCTGACTATGGAACTGATCTTGGATCGGGCTCGACGGTTCCAGGTGATCCTGCTGGGGCTAGGATGAAACCTGGAAGTGGATATGGGTATGGGTTTGGCATTCGACTAGACTCCCCTTTGGGGCCTCTTCGTCTAGAATATGCATTCAACGACAAAGGTGCAAAAAGGTTCCATTTTGGCGGTCAGTATTGGATTCCCACTCCAGCTCAAATTCTCATTGGTCCAACTCAGTTTTCTTGCCCTCTTTGCTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGGCCACAGTCACTAAGAGGAACACAGCCGACAGCCATGCTAAGGCTCCCATGTTATTGCTGTGCACCAGGGTGCAGAAACAACATAGACCATCCGAGGTCGAAGCCACTAAAAGACTTCCGAACCCTACAAACGCATTACAAAAGAAAGCATGGAATCAAGCCATTTACTTGTAGGAAATGTGGGAAAGCGTTTGCTGTTAGAGGGGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGCATTGCACTTGTGGGTCTGATTTTAAGCACAAAAGGTCTTTGAAAGATCACATCAAAGCCTTTGGACATGGACATGCAGCTTATGGGATTGACTCTTTTGACGAAGATGATGAGCCTGCTTCCGAGATCGAACACGATAACGACTTGTCTCACAGCAATGGAGATTGA 3291 46.61 MNTRFSLRAHSSLTVITHTSNHCNEKPHNVICPLHSLPWRALFALQKISALAILSKTRLIFFTRVTVVCDATRGNCFPFSENKGKLRFDSQPGHSPVPVRSSRGFSAGVYAALSPLFQNPILNSSNSSDCFSSLGKARIWSFHFARIRTSFLDHPIKMPPNDDIVFTSRATLRVPHLPPSNSHSSFRFCFRNMASQFDQSCHSIFQFIDSVKRGSKLTNFNHSIPHFWPPSLPFWGSKKITQRGNSVSRWASGSCGAMFVDKSSLICSASLSLIQSDGSNKAESGTRAEHSGRQRGMDDKSTGLVGKSSLLCSASLALARSDEASQPSGSESKESPQKGYSAGRPDEERVLISEVLVRNKDGEELERKDLEMEVLTALKASRPNSALTVREVQEDVHRIINSGYFYSCIPVAVDTRDGIRLIFQVEPNQEFQGLVCEGANVLPAKFLEEAFRDGYGKVVNLRHLDEVISSINSWYGERGLFGRVSAVDILSGGILSLQVSEAEVNNISIRFLDKKTGEPISGNTRPDTILRQLTTKKGQVYSMLQGKRDAETVLTMGIMEDVSIIPQPAADAGKVDLLMNVVERPSGGFSAGGGLSCGTTGGAGPLAALIGSFAYSHRNLFGRNQKLHVSLERGQVDFTFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTLVHGGSNLTIGRVTAGLEFNRPIRPKWSGTGGLYFQRAGARDEQGNPIIMDTIKCPLTASGNADDNMLLAKLESVYTGSGDHGSSMFVLSMEQGLPFLPEWLCFNRVNARARTGVEVGPSQFLLSLSGGHVVGKFCPHEAFAIGGTNSVRGYEEGAVGSGRSYAVGCGEISFPLFAPVEGVLFADYGTDLGSGSTVPGDPAGARMKPGSGYGYGFGIRLDSPLGPLRLEYAFNDKGAKRFHFGGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDSFDEDDEPASEIEHDNDLSHSNGD 1096
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2977391 2993048 + Cp4.1LG05g05020.1 Cpe05g00504 469709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00504 1096 MobiDBLite consensus disorder prediction 1076 1096 - -
Cpe05g00504 1096 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 288 913 IPR039910 -
Cpe05g00504 1096 Gene3D Classic Zinc Finger 993 1068 - -
Cpe05g00504 1096 SMART c2h2final6 931 953 IPR013087 -
Cpe05g00504 1096 SMART c2h2final6 1041 1064 IPR013087 -
Cpe05g00504 1096 SMART c2h2final6 1015 1035 IPR013087 -
Cpe05g00504 1096 MobiDBLite consensus disorder prediction 321 337 - -
Cpe05g00504 1096 Gene3D membrane protein fhac 346 425 - -
Cpe05g00504 1096 ProSiteProfiles Zinc finger C2H2 type domain profile. 1015 1042 IPR013087 -
Cpe05g00504 1096 SUPERFAMILY beta-beta-alpha zinc fingers 996 1035 IPR036236 -
Cpe05g00504 1096 ProSiteProfiles Zinc finger C2H2 type domain profile. 931 958 IPR013087 -
Cpe05g00504 1096 MobiDBLite consensus disorder prediction 283 297 - -
Cpe05g00504 1096 ProSiteProfiles POTRA domain profile. 502 584 IPR034746 -
Cpe05g00504 1096 Pfam Omp85 superfamily domain 619 913 IPR000184 GO:0019867
Cpe05g00504 1096 Gene3D membrane protein fhac 426 504 - -
Cpe05g00504 1096 MobiDBLite consensus disorder prediction 277 304 - -
Cpe05g00504 1096 Gene3D membrane protein fhac 505 585 - -
Cpe05g00504 1096 ProSitePatterns Zinc finger C2H2 type domain signature. 933 953 IPR013087 -
Cpe05g00504 1096 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 587 916 - -
Cpe05g00504 1096 PANTHER OUTER ENVELOPE PROTEIN 80, CHLOROPLASTIC 288 913 - -
Cpe05g00504 1096 MobiDBLite consensus disorder prediction 321 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01767 Cpe-Chr1:13481581 Cpe05g00504 Cpe-Chr5:2977391 1.88E-98 dispersed
Cpe01g01768 Cpe-Chr1:13483454 Cpe05g00504 Cpe-Chr5:2977391 5.08E-59 dispersed
Cpe02g01218 Cpe-Chr2:11021959 Cpe05g00504 Cpe-Chr5:2977391 3.97E-29 dispersed
Cpe05g00504 Cpe-Chr5:2977391 Cpe10g01159 Cpe-Chr10:8500987 6.91E-116 dispersed
Cpe20g00835 Cpe-Chr20:7540995 Cpe05g00504 Cpe-Chr5:2977391 1.19E-16 dispersed
Cpe20g00697 Cpe-Chr20:5474374 Cpe05g00504 Cpe-Chr5:2977391 2.03E-96 transposed
Cpe12g00821 Cpe-Chr12:7326664 Cpe05g00504 Cpe-Chr5:2977391 2.01E-109 wgd
Cpe16g00887 Cpe-Chr16:8355545 Cpe05g00504 Cpe-Chr5:2977391 6.60E-132 wgd
Cpe17g00682 Cpe-Chr17:5457674 Cpe05g00504 Cpe-Chr5:2977391 2.42E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49516 PF01103 Omp85 1.40E-42 CL0193 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00504 K07277 - csv:101205737 1305.43