Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe05g00504 | ATGAATACCAGATTTTCTCTTCGAGCCCATTCCAGCCTCACCGTCATCACCCACACAAGCAACCACTGCAATGAGAAGCCTCACAATGTCATCTGTCCACTTCATTCTCTGCCATGGAGAGCCCTTTTTGCCCTTCAAAAAATCAGTGCACTCGCCATCCTCAGTAAAACTAGGCTCATCTTCTTCACTCGTGTTACTGTTGTTTGTGACGCCACCAGAGGCAATTGCTTTCCCTTTAGTGAAAATAAAGGAAAACTGAGATTCGACTCGCAGCCAGGGCACTCACCAGTTCCAGTTCGATCATCCCGCGGGTTTTCTGCTGGGGTTTATGCCGCTCTTTCCCCTTTGTTCCAAAACCCTATACTCAATTCCTCAAATTCAAGTGATTGCTTCTCAAGTCTAGGCAAGGCAAGGATTTGGAGCTTCCATTTTGCAAGAATTCGAACCTCATTTCTCGATCATCCGATCAAGATGCCACCGAACGATGACATTGTCTTTACTTCGCGCGCTACGCTTAGAGTTCCACACCTTCCTCCGTCTAACTCACATTCTTCTTTCAGATTCTGTTTCAGAAATATGGCTTCGCAGTTCGATCAATCCTGTCACTCAATTTTTCAGTTCATTGATTCGGTTAAGAGAGGGTCGAAATTGACTAATTTCAACCACAGTATTCCCCATTTCTGGCCACCATCGCTTCCCTTTTGGGGTTCAAAGAAGATAACTCAGCGAGGAAATTCGGTTAGTCGATGGGCAAGCGGGAGTTGTGGGGCAATGTTTGTTGATAAATCTAGTTTAATTTGTTCGGCGTCATTGTCGCTAATTCAATCTGACGGATCGAATAAGGCTGAGTCTGGAACTCGTGCGGAGCATTCAGGCAGGCAACGGGGGATGGATGACAAAAGTACGGGGTTGGTTGGAAAATCATCTCTTCTTTGTTCAGCTTCATTGGCTTTGGCTCGGTCTGACGAGGCGAGTCAGCCTAGTGGTTCGGAGAGTAAGGAATCGCCTCAAAAGGGGTATTCAGCTGGTCGGCCGGATGAGGAGAGAGTGCTAATCAGTGAGGTTCTCGTGAGAAATAAGGACGGTGAGGAGCTAGAGAGGAAGGACCTCGAGATGGAGGTTTTGACCGCCTTGAAGGCGAGCAGACCCAATTCTGCGCTCACTGTGCGCGAGGTTCAAGAAGATGTGCACAGGATTATCAATAGTGGGTATTTCTACTCGTGCATACCCGTTGCAGTTGATACCAGAGATGGAATAAGATTAATATTTCAGGTAGAACCAAATCAAGAGTTTCAGGGGCTGGTATGTGAAGGTGCTAATGTCCTTCCCGCAAAGTTTCTGGAGGAAGCTTTTCGCGATGGCTATGGAAAAGTTGTCAATCTCAGGCATTTAGATGAAGTAATATCATCCATCAATAGCTGGTATGGTGAACGAGGCCTTTTTGGCAGGGTATCAGCTGTAGATATTCTATCTGGAGGCATTCTTAGTTTGCAAGTTTCTGAAGCTGAAGTAAATAACATTTCCATCCGATTTCTTGACAAAAAGACTGGGGAGCCAATTTCAGGAAACACAAGACCTGACACAATACTCCGGCAACTTACTACCAAGAAAGGACAGGTCTACAGTATGCTTCAAGGCAAAAGAGATGCAGAGACTGTCTTAACCATGGGGATCATGGAAGATGTCAGCATTATTCCCCAACCTGCTGCTGATGCCGGAAAGGTTGACTTACTGATGAATGTTGTTGAGCGTCCAAGTGGAGGTTTCTCTGCAGGTGGTGGTCTATCATGCGGGACCACTGGTGGTGCTGGCCCTTTAGCAGCCCTTATTGGAAGCTTTGCATATTCCCACAGAAATCTTTTTGGGAGGAATCAGAAGCTCCATGTCTCCTTGGAGAGGGGTCAAGTTGATTTCACTTTTCGCATAAACTACACAGACCCGTGGATTGAAGGAGATGATAAGAGGACATCACGAACGATAATGGTTCAGAACTCAAGGACTCCAGGTACACTTGTCCATGGTGGTAGCAACCTGACCATTGGTCGGGTTACAGCTGGTTTGGAATTCAACCGCCCAATCAGGCCGAAGTGGAGTGGAACGGGAGGACTTTATTTCCAGCGTGCTGGTGCTCGAGATGAGCAAGGAAATCCTATCATTATGGATACCATCAAATGTCCTCTCACTGCAAGTGGCAATGCTGACGACAATATGTTACTGGCTAAACTTGAGAGTGTTTACACTGGTTCTGGGGACCATGGGTCTTCAATGTTTGTTCTCAGCATGGAACAGGGGCTTCCCTTTTTGCCTGAATGGCTATGTTTTAATAGAGTGAATGCTCGTGCCAGAACTGGCGTGGAAGTTGGTCCCTCTCAGTTCCTTTTGAGTTTATCTGGAGGTCATGTAGTTGGCAAATTCTGCCCACACGAAGCATTTGCCATTGGGGGAACAAACAGTGTAAGAGGATATGAAGAAGGTGCTGTAGGCTCTGGTCGATCTTATGCTGTTGGATGTGGAGAGATCTCTTTCCCCTTGTTTGCCCCAGTAGAAGGAGTTCTTTTTGCTGACTATGGAACTGATCTTGGATCGGGCTCGACGGTTCCAGGTGATCCTGCTGGGGCTAGGATGAAACCTGGAAGTGGATATGGGTATGGGTTTGGCATTCGACTAGACTCCCCTTTGGGGCCTCTTCGTCTAGAATATGCATTCAACGACAAAGGTGCAAAAAGGTTCCATTTTGGCGGTCAGTATTGGATTCCCACTCCAGCTCAAATTCTCATTGGTCCAACTCAGTTTTCTTGCCCTCTTTGCTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGGCCACAGTCACTAAGAGGAACACAGCCGACAGCCATGCTAAGGCTCCCATGTTATTGCTGTGCACCAGGGTGCAGAAACAACATAGACCATCCGAGGTCGAAGCCACTAAAAGACTTCCGAACCCTACAAACGCATTACAAAAGAAAGCATGGAATCAAGCCATTTACTTGTAGGAAATGTGGGAAAGCGTTTGCTGTTAGAGGGGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGCATTGCACTTGTGGGTCTGATTTTAAGCACAAAAGGTCTTTGAAAGATCACATCAAAGCCTTTGGACATGGACATGCAGCTTATGGGATTGACTCTTTTGACGAAGATGATGAGCCTGCTTCCGAGATCGAACACGATAACGACTTGTCTCACAGCAATGGAGATTGA | 3291 | 46.61 | MNTRFSLRAHSSLTVITHTSNHCNEKPHNVICPLHSLPWRALFALQKISALAILSKTRLIFFTRVTVVCDATRGNCFPFSENKGKLRFDSQPGHSPVPVRSSRGFSAGVYAALSPLFQNPILNSSNSSDCFSSLGKARIWSFHFARIRTSFLDHPIKMPPNDDIVFTSRATLRVPHLPPSNSHSSFRFCFRNMASQFDQSCHSIFQFIDSVKRGSKLTNFNHSIPHFWPPSLPFWGSKKITQRGNSVSRWASGSCGAMFVDKSSLICSASLSLIQSDGSNKAESGTRAEHSGRQRGMDDKSTGLVGKSSLLCSASLALARSDEASQPSGSESKESPQKGYSAGRPDEERVLISEVLVRNKDGEELERKDLEMEVLTALKASRPNSALTVREVQEDVHRIINSGYFYSCIPVAVDTRDGIRLIFQVEPNQEFQGLVCEGANVLPAKFLEEAFRDGYGKVVNLRHLDEVISSINSWYGERGLFGRVSAVDILSGGILSLQVSEAEVNNISIRFLDKKTGEPISGNTRPDTILRQLTTKKGQVYSMLQGKRDAETVLTMGIMEDVSIIPQPAADAGKVDLLMNVVERPSGGFSAGGGLSCGTTGGAGPLAALIGSFAYSHRNLFGRNQKLHVSLERGQVDFTFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTLVHGGSNLTIGRVTAGLEFNRPIRPKWSGTGGLYFQRAGARDEQGNPIIMDTIKCPLTASGNADDNMLLAKLESVYTGSGDHGSSMFVLSMEQGLPFLPEWLCFNRVNARARTGVEVGPSQFLLSLSGGHVVGKFCPHEAFAIGGTNSVRGYEEGAVGSGRSYAVGCGEISFPLFAPVEGVLFADYGTDLGSGSTVPGDPAGARMKPGSGYGYGFGIRLDSPLGPLRLEYAFNDKGAKRFHFGGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDSFDEDDEPASEIEHDNDLSHSNGD | 1096 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2977391 | 2993048 | + | Cp4.1LG05g05020.1 | Cpe05g00504 | 469709 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe05g00504 | 1096 | MobiDBLite | consensus disorder prediction | 1076 | 1096 | - | - | |
Cpe05g00504 | 1096 | PANTHER | SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER | 288 | 913 | IPR039910 | - | |
Cpe05g00504 | 1096 | Gene3D | Classic Zinc Finger | 993 | 1068 | - | - | |
Cpe05g00504 | 1096 | SMART | c2h2final6 | 931 | 953 | IPR013087 | - | |
Cpe05g00504 | 1096 | SMART | c2h2final6 | 1041 | 1064 | IPR013087 | - | |
Cpe05g00504 | 1096 | SMART | c2h2final6 | 1015 | 1035 | IPR013087 | - | |
Cpe05g00504 | 1096 | MobiDBLite | consensus disorder prediction | 321 | 337 | - | - | |
Cpe05g00504 | 1096 | Gene3D | membrane protein fhac | 346 | 425 | - | - | |
Cpe05g00504 | 1096 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 1015 | 1042 | IPR013087 | - | |
Cpe05g00504 | 1096 | SUPERFAMILY | beta-beta-alpha zinc fingers | 996 | 1035 | IPR036236 | - | |
Cpe05g00504 | 1096 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 931 | 958 | IPR013087 | - | |
Cpe05g00504 | 1096 | MobiDBLite | consensus disorder prediction | 283 | 297 | - | - | |
Cpe05g00504 | 1096 | ProSiteProfiles | POTRA domain profile. | 502 | 584 | IPR034746 | - | |
Cpe05g00504 | 1096 | Pfam | Omp85 superfamily domain | 619 | 913 | IPR000184 | GO:0019867 | |
Cpe05g00504 | 1096 | Gene3D | membrane protein fhac | 426 | 504 | - | - | |
Cpe05g00504 | 1096 | MobiDBLite | consensus disorder prediction | 277 | 304 | - | - | |
Cpe05g00504 | 1096 | Gene3D | membrane protein fhac | 505 | 585 | - | - | |
Cpe05g00504 | 1096 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 933 | 953 | IPR013087 | - | |
Cpe05g00504 | 1096 | Gene3D | membrane protein fhac: a member of the omp85/tpsb transporter family | 587 | 916 | - | - | |
Cpe05g00504 | 1096 | PANTHER | OUTER ENVELOPE PROTEIN 80, CHLOROPLASTIC | 288 | 913 | - | - | |
Cpe05g00504 | 1096 | MobiDBLite | consensus disorder prediction | 321 | 345 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01767 | Cpe-Chr1:13481581 | Cpe05g00504 | Cpe-Chr5:2977391 | 1.88E-98 | dispersed | |
Cpe01g01768 | Cpe-Chr1:13483454 | Cpe05g00504 | Cpe-Chr5:2977391 | 5.08E-59 | dispersed | |
Cpe02g01218 | Cpe-Chr2:11021959 | Cpe05g00504 | Cpe-Chr5:2977391 | 3.97E-29 | dispersed | |
Cpe05g00504 | Cpe-Chr5:2977391 | Cpe10g01159 | Cpe-Chr10:8500987 | 6.91E-116 | dispersed | |
Cpe20g00835 | Cpe-Chr20:7540995 | Cpe05g00504 | Cpe-Chr5:2977391 | 1.19E-16 | dispersed | |
Cpe20g00697 | Cpe-Chr20:5474374 | Cpe05g00504 | Cpe-Chr5:2977391 | 2.03E-96 | transposed | |
Cpe12g00821 | Cpe-Chr12:7326664 | Cpe05g00504 | Cpe-Chr5:2977391 | 2.01E-109 | wgd | |
Cpe16g00887 | Cpe-Chr16:8355545 | Cpe05g00504 | Cpe-Chr5:2977391 | 6.60E-132 | wgd | |
Cpe17g00682 | Cpe-Chr17:5457674 | Cpe05g00504 | Cpe-Chr5:2977391 | 2.42E-107 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49516 | PF01103 | Omp85 | 1.40E-42 | CL0193 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe05g00504 | K07277 | - | csv:101205737 | 1305.43 |