Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00542 ATGAAACTAATAAAGCATCCACATGTCGTCCAATTGTTCGAGGTTATGGGGAGCAAAACAAAGATATTCATTGTTTTGGAGTTCGTTACCGGAGGCGAACTTTTTGATAAAATTGTAAATCATGGACGGATGACCGAAAGTGAGGCACGGAGATATTTCCAGCAACTTATAAACGCGGTTGATTATTGTCATAGCAGAGGTGTTTACCATAGGGATCTTAAGCCTGAAAATCTATTGTTAGATGCCAAAGGAAATCTTAAAGTGTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTTAAGGACGATGGCCTGCTTCACACTACTTGTGGAACTCCTAACTATGTTGCTCCTGAGGTCCTTAACGATAGAGGCTATGATGGAGCGACTGCAGACTTATGGTCATGTGGAGTCATACTCTTTGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATATCATAAACCTTTATAAAAAGATCTCGGCCGCTGAATTTACTTGTCCTCCATGGCTTTCTTTAGATGCCATGAAATTGATCGCTCGAATTTTGGATCCGAACCCAATGACTCGCATCACCGTACCAGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCCCCGGTTTTCGAGGAGCCTAAGATTGCAAACTTAGATGATGTAGAAGCAGTCTTCAAAGATTCAGAAGAGCACCATGTGACAGAGAAGAAGGAAGAACAACCTGTAGCCATGAACGCGTTCGAGTTAATTTCAATGTCGAAGGGGCTCAACCTGGAAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACCAGGTTCACCTCTAAATGCTCAGCTAATGAAATTATGAGACTCGAAAATGTGAAAGCGGGTCGGAAGGGAAACCTTAATGTTGCCACAGAGATTTTGCAAGTGGCACCTTCTGTTCATGTGGTTGAGATGCGAAAAGCCAAGGGGGACACTTTAGAGTTTCACAAGTTCTACAAAAACCTCTCCACTTCTCTAGAGGATGTTGTTTGGAAGACTGAGGAAGACATGCCAGCAAAAAAGTGA 1065 41.6 MKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMTESEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAKGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNIINLYKKISAAEFTCPPWLSLDAMKLIARILDPNPMTRITVPEILEDEWFKKDYKPPVFEEPKIANLDDVEAVFKDSEEHHVTEKKEEQPVAMNAFELISMSKGLNLENLFGTEQEFKRETRFTSKCSANEIMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMPAKK 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3233700 3240122 + Cp4.1LG05g05470.1 Cpe05g00542 469747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00542 354 ProSiteProfiles NAF domain profile. 242 266 IPR018451 GO:0007165
Cpe05g00542 354 Gene3D Kinase associated domain 1, KA1 241 287 - -
Cpe05g00542 354 Gene3D Kinase associated domain 1, KA1 288 345 - -
Cpe05g00542 354 ProSiteProfiles Protein kinase domain profile. 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g00542 354 Pfam Protein kinase domain 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g00542 354 Gene3D Phosphorylase Kinase; domain 1 1 33 - -
Cpe05g00542 354 Pfam NAF domain 244 292 IPR004041 GO:0007165
Cpe05g00542 354 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 1 347 - -
Cpe05g00542 354 CDD CIPK_C 248 341 - -
Cpe05g00542 354 SUPERFAMILY Protein kinase-like (PK-like) 1 231 IPR011009 -
Cpe05g00542 354 PANTHER - 1 347 - -
Cpe05g00542 354 Gene3D Transferase(Phosphotransferase) domain 1 34 211 - -
Cpe05g00542 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 68 80 IPR008271 GO:0004672|GO:0006468
Cpe05g00542 354 SMART serkin_6 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00542 Cpe-Chr5:3233700 Cpe10g00071 Cpe-Chr10:526181 8.25E-177 dispersed
Cpe05g00542 Cpe-Chr5:3233700 Cpe20g00539 Cpe-Chr20:3136138 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62404 PF00069 Pkinase 2.10E-57 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00542 - - csv:101221173 678.707