Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00576 ATGGCAATTAATTTCTCCCTCTTTTTCTGCTCCTGCTCCTTCGTTTCTGATCACGCCGCCGCCTCCGAATCCGACGACTGTGAAATGGCTGAGGCCGTGGTGGCGACTTCTGAGGATGCCGTGGTGGCGACTTCTGAGGATGTGGATTTTGGTTATGCGACGGCCGAGATCGAGAACAATAGAGAAAGCAGTTCAAATGGACTTGGGATTGGGATCAAGTGGGAGTGCCTTTTGCCCAAGGTTATGCTCAGGGTCTTGCTCGTTGAAGCGGACGATTCCACCAGACAGATTATCACTGCTCTTCTCCGCAAGTCCTGCTACCGAGTTGCTGCTGTTCCTGATGGCATGAAAGCGTGGGAGATTCTTAAAGCAAGGCCCCGTAATGTAGATCTTATATTGGCGGAAGTTGAATTACCATCAATGTCTGGATTTTCTCTGCTAACTCTGATCATGGGGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCATCTGAAGATTCTATCAGCACCGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTTAAGCCCTTAAGGAGAAATGAACTGAGTCATCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCCAATGTAAGAACTGACATTCAAGAAAAGGTTGAAGTCACTTCAGAAAATGAGACTGCAAGCAACCACTCCACTGATTATGTTGCTGGAGTTGAGAGGAATGATAACAACACTGAGAAAGGGAGTGATACTCAGAGCTCTTCTACAAAGGTAGATTTTGAGGCTGGTAGTAAGATGCAGGAAAGTTCACAGCCGAGGCAGGAAAAAGCCTCTTCAAATGACTTCAAGCTACAGAAAGATGGGGGTCACATCAATTTGAGTCAGAGATTGGCTATACATGAAAATGAATCTGGAGGATTGGCAATGAGTTGCTATGCCAATGATGATTTACCAATTACACTTAGCATGGGTCTTGAGCCGACCAATGATGGGAGAAGTCCTTATATTGCTAGTGAAGCAGAGGATTTGCTTGCCAACCCATCTAGAGATGCAACTGCGTTGAATCATGCCTGTATCAATTATCCCGATGACTACCAAAGAAGATCTCCTTCCACTGTTGCTGCCACAAACAATTTCGGCTCTGCTCTTCATTTGGATCTTTCCCTAAGAAGATGTCAACCGAATGATTTTGAGGACCGTGCTGCAGAAGGACGAGCTACCCTCAAACATTCCAGTGCTTCAGCTTTTACAAGATACACTTCCAGGCCATTGCAAACACTTCCAGCAAAATCAAGCAGTATCTGTGATGAACAAAAAGAATTTGGAAGCAATCCCGAGCATATTGGAAGTATTGCTGCTACTCCTACCTCTGATACCATTAATACTACGCTAAGTCTGCAAAACAGTAATACTTCTATGCCCCTGATGACAAGTCTATCTGCTCTCTCTGAAGTTGCAAAATCAAGTACTTCAGAGACAGAAACCCCTCATCAAGTTACAGTGAAAGATTTGATGTCTAGTAGTCAATGCTCGGGCCATGGCTCTTTACTTTCTCCCAACTTGTGCACACAAGGGGGGGGTGCGTCATCGTCTCCATGCTCAACTTTAGTCACTCATCCCGAACCCATCTTGGCAAAACAGACAGTTTATCCCCTAAACCTTGAGAATCATAATTTGGAGCAGTTTCTGAACCAGCATCCCAACACAAGTGATCCAGGAAGCCGAAAGTTAGAGAACTCAGGGAAGAAGTTGGAGTATGCAGAAAATCAAGGCCATATATCACCTACCACTGATCACAGTGCAAACAGTAGTCTATGTGGTGGTAACACAAGTCATGTTCGAAGCGTGGGATATCCTAGCACATGCGGAAGCAACAACAATGTCGACCGGGTTGGCATTGCTGCAAGGGTTACATCTGAGAGCAAAAATGAAGAAGCTTTGTCTTATCAAGGAGGAGATCCTCACCGGAGCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAGCGAAAAGATCGATGTTATGATAAAAAGGTGCGTTATGAGAGCAGGAAAAAGCTGGCAGAACAGCGTCCTAGAGTGAAGGGTCAGTTTGTCCGTAGAGTATACACTGATGATCCATTGCCTGCAGAAAGCAACGTCAATACATCCAACGGACACCCAAATCCCATTGAATATCCCTTCCCTCTGTTCTTCCCTGCTAATTAA 2211 44.87 MAINFSLFFCSCSFVSDHAAASESDDCEMAEAVVATSEDAVVATSEDVDFGYATAEIENNRESSSNGLGIGIKWECLLPKVMLRVLLVEADDSTRQIITALLRKSCYRVAAVPDGMKAWEILKARPRNVDLILAEVELPSMSGFSLLTLIMGHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELSHLWQHVWRRQASSNVRTDIQEKVEVTSENETASNHSTDYVAGVERNDNNTEKGSDTQSSSTKVDFEAGSKMQESSQPRQEKASSNDFKLQKDGGHINLSQRLAIHENESGGLAMSCYANDDLPITLSMGLEPTNDGRSPYIASEAEDLLANPSRDATALNHACINYPDDYQRRSPSTVAATNNFGSALHLDLSLRRCQPNDFEDRAAEGRATLKHSSASAFTRYTSRPLQTLPAKSSSICDEQKEFGSNPEHIGSIAATPTSDTINTTLSLQNSNTSMPLMTSLSALSEVAKSSTSETETPHQVTVKDLMSSSQCSGHGSLLSPNLCTQGGGASSSPCSTLVTHPEPILAKQTVYPLNLENHNLEQFLNQHPNTSDPGSRKLENSGKKLEYAENQGHISPTTDHSANSSLCGGNTSHVRSVGYPSTCGSNNNVDRVGIAARVTSESKNEEALSYQGGDPHRSSQREAALTKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRRVYTDDPLPAESNVNTSNGHPNPIEYPFPLFFPAN 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3487535 3496211 - Cp4.1LG05g05750.1 Cpe05g00576 469781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00576 736 SMART REC_2 83 198 IPR001789 GO:0000160
Cpe05g00576 736 ProSiteProfiles Response regulatory domain profile. 84 202 IPR001789 GO:0000160
Cpe05g00576 736 MobiDBLite consensus disorder prediction 218 239 - -
Cpe05g00576 736 CDD psREC_PRR 85 188 - -
Cpe05g00576 736 ProSiteProfiles CCT domain profile. 660 702 IPR010402 GO:0005515
Cpe05g00576 736 Pfam Response regulator receiver domain 85 195 IPR001789 GO:0000160
Cpe05g00576 736 Gene3D - 83 311 - -
Cpe05g00576 736 MobiDBLite consensus disorder prediction 247 278 - -
Cpe05g00576 736 PANTHER TWO-COMPONENT RESPONSE REGULATOR 56 693 IPR045279 GO:0009736
Cpe05g00576 736 SUPERFAMILY CheY-like 82 209 IPR011006 -
Cpe05g00576 736 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 56 693 - -
Cpe05g00576 736 Pfam CCT motif 660 702 IPR010402 GO:0005515
Cpe05g00576 736 MobiDBLite consensus disorder prediction 218 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00576 K12130 PRR5; pseudo-response regulator 5 - csv:101209788 1020.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00576 Cpe13g00339 CCT
Cpe05g00576 Cpe13g00339 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01049 Cpe-Chr2:9664362 Cpe05g00576 Cpe-Chr5:3487535 4.13E-16 dispersed
Cpe05g00576 Cpe-Chr5:3487535 Cpe19g00394 Cpe-Chr19:3519895 3.78E-18 dispersed
Cpe13g00339 Cpe-Chr13:3053370 Cpe05g00576 Cpe-Chr5:3487535 0 wgd
Cpe03g01835 Cpe-Chr3:13677288 Cpe05g00576 Cpe-Chr5:3487535 1.18E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g3 . . . . Bpe01g00409 . Bma14g00744 . . . . . . . . Cpe05g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe08g00340 . . Bma11g00387 Sed01g3430 . . . . . . . . Bhi10g00491 Tan07g0561 Cmetu05g1769 . Hepe08g0006 . . Cla03g01411 Cam03g1491 Cec03g1529 Cco03g1523 Clacu03g1514 Cmu03g2071 Cre03g1743 . . . .
Vvi16g961 . . Bda05g00143 Bda07g01959 Bpe03g00223 . Bma10g01321 Bma14g02030 . . . Cma15g00995 Car02g00951 . . Cpe05g00576 . . . . . . . . Cla01g00007 Cam01g0007 Cec01g0006 Cco01g0008 Clacu01g0008 Cmu01g0008 Cre09g2497 Cone1ag1021 Cone5ag0728 . . . Csa05g00009 Chy09g01471 . Blo07g00314 . . . . . . . . Cmo02g01182 Cmo15g01055 . . . . . Cpe13g00339 Bhi12g00702 . . . Hepe06g0835 . . . . . . . . . . . . Cme09g02020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007665 1 2 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49518 PF00072 Response_reg 8.40E-21 CL0304 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00576 Cpe_Chr05 FPKM 14.962641 15.773354 15.453237 15.941025 12.849991 12.373451 14.049446 14.708293 14.446692 16.822659