Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00585 ATGGGGAGCGGTTCTTCCGAGACGAGGTTCGTACAGGAATTGCTTCTCTATGCAGCCAGTGCCGCCTTGAGCTGCTTGGTTCTTTTCGCTGGCCTCCGCCACCTCGACCCTAACCGCGAGGCCTCCAAGAAGGCTCTCGAGCACAAGAAGGAGATTGCCAAACGATTGGGCCGCCCTCTCATCCAGACAAACCCTTACGAGAAAGGGGTTTTATTGTATGGACCTCCTGGTACTGGGAAAACAATGCTGGCAAAAGCTATCGCAAAGGAGTCTGGAGCTGTTTTCATCAATGTCAGGATTTCAAATCTGATGAGCAAATGGTTTGGAGATGCACAAAAGCTAGTGGCTGCTGTGTTTAGCTTGGCTTATAAGCTCCAGCCTGCTATTATCTTCATTGACGAGGTCGATAGTTTTTTGGGTCAGCGACGAACTACAGATCATGAAGCAATGACGAACATGAAGACTGAGTTCATGGCCTTATGGGATGGATTTACCACTGATCAGAATGCTCGTGTGATGGTCCTTGCTGCTACCAATCGCCCATCCGAACTGGATGAAGCTATACTTCGGCGTCTTCCACAAGCCTTTGAGATCGGAATACCTGATCGGAGGGAGAGAGCAGAGATATTAAAGGTGATTTTGAAGGGAGAGCGGGTTGAAAACAACATAGACTATGACCGTGTGGCAAGCTTGTGTGAGGGGTACACAGGTTCAGATATTCTGGAACTATGCAAGAAAGCTGCTTATTTTCCGATCCGGGATCTTCTTGATGAAGAGAAGAAGGGGAAACAATCTTCTGAGCCAAGGCCACTGTCGCAGTTGGATTTGGAAAAGGTTCTTGCTACATCGACAAAGACAAAGGTTGCTGCAAGCGAATACACTGGATTGAGATCTAATTCATCATCAGGCTGGGCAGGGCACAGGGAAGCTGGTGATTATGAGGTTCAAGCAGCAATAAGTGAACTCTCCAAGCTTGTAGTCTCCCAAATCTTAAATATCCAGTCCGATGCTCGGGATTCGTGA 1023 48.0 MGSGSSETRFVQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEAMTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEILKVILKGERVENNIDYDRVASLCEGYTGSDILELCKKAAYFPIRDLLDEEKKGKQSSEPRPLSQLDLEKVLATSTKTKVAASEYTGLRSNSSSGWAGHREAGDYEVQAAISELSKLVVSQILNIQSDARDS 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3545490 3548822 + Cp4.1LG05g05870.1 Cpe05g00585 469790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00585 340 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 67 - -
Cpe05g00585 340 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 68 300 - -
Cpe05g00585 340 ProSitePatterns AAA-protein family signature. 172 191 IPR003960 GO:0005524|GO:0016887
Cpe05g00585 340 Gene3D - 66 285 IPR027417 -
Cpe05g00585 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 258 IPR027417 -
Cpe05g00585 340 Gene3D - 201 281 - -
Cpe05g00585 340 Pfam AAA+ lid domain 222 258 IPR041569 -
Cpe05g00585 340 Pfam ATPase family associated with various cellular activities (AAA) 70 199 IPR003959 GO:0005524|GO:0016887
Cpe05g00585 340 CDD AAA 51 199 - -
Cpe05g00585 340 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 1 67 - -
Cpe05g00585 340 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 68 300 - -
Cpe05g00585 340 SMART AAA_5 66 202 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00585 K22530 ATAD1; ATPase family AAA domain-containing protein 1 [EC:3.6.1.-] - csv:101204071 612.453
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00585 Cpe09g00014 CCT
Cpe05g00585 Cpe13g00326 CCT
Cpe05g00585 Cpe09g00014 ECH
Cpe05g00585 Cpe13g00326 ECH
Cpe05g00585 Cpe14g00023 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00585 Cpe-Chr5:3545490 Cpe20g00310 Cpe-Chr20:1743519 5.03E-72 dispersed
Cpe13g00326 Cpe-Chr13:2911349 Cpe05g00585 Cpe-Chr5:3545490 0 wgd
Cpe14g00023 Cpe-Chr14:137935 Cpe05g00585 Cpe-Chr5:3545490 0 wgd
Cpe05g00585 Cpe-Chr5:3545490 Cpe09g00014 Cpe-Chr9:80867 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g994 Blo06g01054 Blo15g00077 . Bda07g01950 . Bpe07g01027 . Bma14g02021 Cmo16g00035 Cmo18g01364 Cma02g01138 Cma15g01011 Car02g00942 Car15g00945 . Cpe05g00585 Cpe14g00023 Bhi01g01520 . . . . Mch10g0036 . Cla01g00024 . . . . . . . . . . . . . Cme06g01170 . Blo09g00009 . Bda15g00794 . Bpe12g00340 . Bma12g01222 . Cmo02g01169 Cmo15g01074 Cma16g00030 Cma18g01333 Car16g00027 Car18g01248 Cpe09g00014 Cpe13g00326 Bhi12g00680 . . Lac11g0112 Hepe06g0815 . Lcy12g0093 Cla05g00988 Cam05g1079 Cec05g1087 Cco05g1081 Clacu05g1073 Cmu05g1023 Cre05g1097 Lsi09g00005 Csa03g01964 Chy06g01176 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002509 1 2 1 1 1 2 4 1 1 2 1 2 3 2 2 4 2 1 4 2 2 2 2 2 2 1 2 3 2 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00585 Cpe_Chr05 FPKM 0.0 0.0 0.558262 1.735891 1.66613 2.002441 2.051071 0.0 0.0 0.0