Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00589 ATGCACAAGCGAAGAACTCTAGCTCCGAAACCCACTACCAGCCAGGATTTTGCTTCAGATGACGACGAATACGACGACGTTTCATGTCAGAAGTGCGCCTCCGGCGACTCTCCGGCTGAGCTTCTTCTCTGCGACAAATGTGATAGAGGGTATCATCTCTTTTGTCTTTCCCCCATCCTCGTTTCAGTCCCCAAGGGATCCTGGTTTTGTCCGACTTGCTCCAACCACAAGAAGCTCAAATCTTTCCCTCTTGTTCAAACTAAAATTGTTGATTTTTTCCGCATCCAAAGACCTGCGGACTCCCAAACGGACTTGATGTTAGAGAATCGAAAGAAACGAAGACGGGCTGGTAGCTTAGTACTTTCTAGAAAGAGAAGGAAGCTCTTGCCATTTAATCCGATTGCAGATCCTGCAAGACGCCTGGAACAAATGGCATCACTGGCAACAGCATTGACGGCTACTGGTACAGATTACAGCAACGAGCTTACATATATGCGTGGCATGGCACCAAGGTCAGCAAACTGCGCATCTTTGGAGCACGGTGGAATGCAGGTTCTTCCTAAAGAGGACGTTGAAACCTTAAACTTGTGCAGAAGTATGATGGAGAGAGGGGAATGGCCTCCCCTTATGGTTGTTTTTGATCCTCGAGAAGGGTTTACTGTGGAGGCAGATAGGTTTATAAAGGACTTGACCATAATTACTGAATATACTGGGGATGTTGATTACCTGAGGAACCGTGAACATGATGAAGGGGATAGTATGATGACATTACTGTCTGCCACTAGCCCATCTAAAAGCCTCGTCATCTGTCCCGACAAACGTAGTAACATTGCCCGTTTCATAAATGGAATCAACAACCATACACAGGATGGTAGAAAAAAGCAAAACCTTAAGTGCGTTAGGTTCAATGTAAATGGTGAATGTAGAGTTCTACTTATTGCTAACAGAGATATATCTAAGGGAGAGAGATTGTATTATGACTACAATGGATACGAACATGAATACCCCACCGAGCATTTTGTGTAA 1026 44.83 MHKRRTLAPKPTTSQDFASDDDEYDDVSCQKCASGDSPAELLLCDKCDRGYHLFCLSPILVSVPKGSWFCPTCSNHKKLKSFPLVQTKIVDFFRIQRPADSQTDLMLENRKKRRRAGSLVLSRKRRKLLPFNPIADPARRLEQMASLATALTATGTDYSNELTYMRGMAPRSANCASLEHGGMQVLPKEDVETLNLCRSMMERGEWPPLMVVFDPREGFTVEADRFIKDLTIITEYTGDVDYLRNREHDEGDSMMTLLSATSPSKSLVICPDKRSNIARFINGINNHTQDGRKKQNLKCVRFNVNGECRVLLIANRDISKGERLYYDYNGYEHEYPTEHFV 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3564840 3567343 + Cp4.1LG05g05860.1 Cpe05g00589 469794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00589 341 SUPERFAMILY SET domain 199 329 IPR046341 -
Cpe05g00589 341 CDD PHD_RSF1 29 73 - -
Cpe05g00589 341 Gene3D SET domain 113 341 IPR046341 -
Cpe05g00589 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 89 IPR013083 -
Cpe05g00589 341 ProSitePatterns Zinc finger PHD-type signature. 29 73 IPR019786 -
Cpe05g00589 341 CDD SET_ATXR5_6-like 204 341 - -
Cpe05g00589 341 ProSiteProfiles Zinc finger PHD-type profile. 26 76 IPR019787 -
Cpe05g00589 341 SMART PHD_3 28 74 IPR001965 -
Cpe05g00589 341 Pfam SET domain 254 329 IPR001214 GO:0005515
Cpe05g00589 341 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 3 338 - -
Cpe05g00589 341 SUPERFAMILY FYVE/PHD zinc finger 19 80 IPR011011 -
Cpe05g00589 341 Pfam PHD-finger 29 75 IPR019787 -
Cpe05g00589 341 ProSiteProfiles SET domain profile. 207 329 IPR001214 GO:0005515
Cpe05g00589 341 MobiDBLite consensus disorder prediction 1 22 - -
Cpe05g00589 341 PANTHER HISTONE ACETYLTRANSFERASE 3 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00589 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - csv:101205046 629.787
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00589 Cpe13g00321 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00589 Cpe-Chr5:3564840 Cpe16g00078 Cpe-Chr16:1571677 8.97E-156 dispersed
Cpe18g00638 Cpe-Chr18:6574514 Cpe05g00589 Cpe-Chr5:3564840 9.45E-06 dispersed
Cpe13g00321 Cpe-Chr13:2798011 Cpe05g00589 Cpe-Chr5:3564840 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1011 Blo06g01057 . . . . . . . . . . Cma15g01016 Car02g00937 Car15g00951 . Cpe05g00589 . . . . . . . . Cla01g00030 Cam01g0029 Cec01g0027 Cco01g0029 Clacu01g0029 Cmu01g0028 Cre09g2478 . . . . . . . . . . . Bda15g00790 . Bpe12g00344 Bma08g00393 . . Cmo02g01162 Cmo15g01080 . . . . . Cpe13g00321 Bhi12g00670 . . . Hepe06g0809 . . . . . . . . . Lsi09g00010 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49519 PF00856 SET 8.70E-05 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00589 Cpe_Chr05 FPKM 6.262319 6.620953 3.974394 4.082679 6.30312 6.491353 5.928943 10.566828 10.168685 9.356471