Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00590 ATGGGTAGCGTTAGCGAGGATGAAGAATGCCCGTTTTTTGATGCGCCAGATATCAATGTTCCCTCGATATCGGAAGCCAATTTCGATGGGATTGAGGCGGGCTTTGATTCTCGTCCCAGATTTAACAATTGGGTCGATGGGAGTTTGGGTTATGATGTATGGAATCGAAGCCCTATGAGTGTTCATGAGCGTCGAAGTAAGTTTTTGAAATGGATGGGAATGGGATTAGATCGAGCTCCTCTCGCTAATGGGAATTCTCTCACTGTTTGTTGTGATTGGAGAGAAGGGGATGGAGAAAGATGGAGGGATAATTCCGGGGCTGAATCCTCAGAGTTTGAAGATGTGTTTTGCTCGGGTCGATCTTCGTTGTCGTGTTGGTCTAATGATGATCTTGAACATTCAGAGATGGCTTCAAAGAATAGCATTCTGTATAGGGATGGTGGGATTCATGGAGAATGTGGCAGGAAAATTGGGGATCTAAAAAAATCTGTTCGGTTTGCAATGCCTGAAAGGCTCGAGGAGGCATCGAGTTCTTTGCCGTCTTTCCAACAAATGATGGAGATGGAGGCTGAGAGGGCGAACATTCCGTTGAGTACAGAACGAAGAGTCAACAAACGTTGGCTTAAGAAATTACGATCGGCTGCCTGCATTTTCGATAAGCATGGTAAGTCAAGGTTGGTTGTTGATGGTGATTTGAGTACAGGGTCGAGAGTGCCGAGGATGAAGGTTCGCCATTGCAAGAAGCAATTGAAAGAACTCTCAGCTATGTATATGGGACAAGATATCCAGGCACATCAAGGTGCTGTTTTGACGATGAAGTTTAGTCCTAGTGGACGGTTTCTCGCTACTGGTGGTGATGATGGGATTGTTAAATTATGGCAAGTGATTGAAGATGAGAGATCGAATGAATCCGACATTCCCGAGATCGATCCATCCTGCATTTACTTCACAGTTAATCACCTTTCTGAGTTGAAACCCCTGCGTTCGGAGAAAGAGAAGATAGCTAACTCGATGGCCTTGAAGAAAACATCAGAATCAGCTTCCCCCTCACGGTTCGTCTCCATGTTGGCTGCAGTTACTTGTGTTCATTTTAATCCCATGGATGAAAATTACTTTATCAGTGGTTCAATAGATGGAAAGATACGCATTTGGGGGATTCCTTCTTCTCAAGTTGTTGACTGGATAGACATTAGGGAAATTGTCACTGCAGTGTCCTATCATCCTAATGGGCGGAGAGGAGTCGTTGGCTCCATAAACGGTACCTGCCGCATCTTTAGAATAATAGCCCCCTCACGGTTCGTCTCCATGTTGGCTGCAGTTACTTGTGTTCATTTTAATCCCATGGATGAAAATTACTTCATCAGTGGTTCAATAGATGGAAAGATACGCATTTGGGGGATTCCTTCTTCTCAAGTTGTTGACTGGATAGACATTAGGGAAATTGTCACTGCAGTGTCCTATCATCCTAATGGGCGGAGAGGAGTCGTTGGCTCCATAAATGGTACCTGCCGCATCTTTAGAGTAATAGGTGATAATAACCTGGAATTAGATGCCGAAATATGTTTATCGACCCCCTCACGGTTCGTCTCCATGTTGGCTGCAGTTACTTGTGTTCATTTTAATCCCATGGATGAAAATTACTTCATCAGTGGTTCAATAGATGGAAAGATACGCATTTGGGGGATTCCTTCTTCTCAAGTTGTTGACTGGATAGACATTAGGGAAATTGTCACTGCAGTGTCCTATCATCCTAATGGGCGGAGAGGAGTCGTTGGCTCCATAAATGGTACCTGCCGCATCTTTAGAGTAATAGGTGATAATAACCTGGAATTAGATGCCGAAATATGTTTATCGAGTAAGAAGAAGTCGCCCAGTAAAAAGATAACAGGGTTTCAGTATTCTGCAAACGATTCGAGCAGAATAATGGTCAGCTCTGCTGATTCTCGAATCCGGATTGTTCAAGGGCTTGAGGTGATCCAGAAATACAAGGGGCCTTGTAATACCGGAAACCAGATGTCTGCGTCGTTCACCTCAGACGGGAAACATATTATATCGGCTAGTGGCGATTCTAATGTATATTTATGGAACTGCAGTTATAAGAACGAGTCTATTTTTTCCCCGGTGAAGAAGATCAAGTCGTATGAATATTTCCCCTCCAATGGTTCCATTGCAGTACCGTGGTGTGGTTTGAGAAGTAACACAGACGACGAAAGACGTTTTGCTGGCACGCGAAGGAGTTCTTCTGACACTTTCCCGCTTTCGTCCCCGGCCTTTTTCTCTTTGAGGCAAGAGTTATTAGAATCCTTCCCCAAGGGATCTGCAACTTGGCCCGAGGAGAAGCTCCACGCTTCGAGCCTACTAATGAAACCATCTATGATGCATAAATCTCGGTATAAATTTCTGAAATTGTCTTGCCAAAATACATTGAGTTCTCACGCGTGGGGTCTGGTCATCGTGACTGCAGGATGGGATGGACGAATCAGGTCGTTTTACAATTACGGGTTACCTGTACACGTCTGA 2520 44.48 MGSVSEDEECPFFDAPDINVPSISEANFDGIEAGFDSRPRFNNWVDGSLGYDVWNRSPMSVHERRSKFLKWMGMGLDRAPLANGNSLTVCCDWREGDGERWRDNSGAESSEFEDVFCSGRSSLSCWSNDDLEHSEMASKNSILYRDGGIHGECGRKIGDLKKSVRFAMPERLEEASSSLPSFQQMMEMEAERANIPLSTERRVNKRWLKKLRSAACIFDKHGKSRLVVDGDLSTGSRVPRMKVRHCKKQLKELSAMYMGQDIQAHQGAVLTMKFSPSGRFLATGGDDGIVKLWQVIEDERSNESDIPEIDPSCIYFTVNHLSELKPLRSEKEKIANSMALKKTSESASPSRFVSMLAAVTCVHFNPMDENYFISGSIDGKIRIWGIPSSQVVDWIDIREIVTAVSYHPNGRRGVVGSINGTCRIFRIIAPSRFVSMLAAVTCVHFNPMDENYFISGSIDGKIRIWGIPSSQVVDWIDIREIVTAVSYHPNGRRGVVGSINGTCRIFRVIGDNNLELDAEICLSTPSRFVSMLAAVTCVHFNPMDENYFISGSIDGKIRIWGIPSSQVVDWIDIREIVTAVSYHPNGRRGVVGSINGTCRIFRVIGDNNLELDAEICLSSKKKSPSKKITGFQYSANDSSRIMVSSADSRIRIVQGLEVIQKYKGPCNTGNQMSASFTSDGKHIISASGDSNVYLWNCSYKNESIFSPVKKIKSYEYFPSNGSIAVPWCGLRSNTDDERRFAGTRRSSSDTFPLSSPAFFSLRQELLESFPKGSATWPEEKLHASSLLMKPSMMHKSRYKFLKLSCQNTLSSHAWGLVIVTAGWDGRIRSFYNYGLPVHV 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3577026 3582022 + Cp4.1LG05g05900.1 Cpe05g00590 469795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00590 839 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 433 471 - -
Cpe05g00590 839 PANTHER WD REPEAT DOMAIN 44 358 427 IPR040324 -
Cpe05g00590 839 PANTHER WD REPEAT DOMAIN 44 535 838 IPR040324 -
Cpe05g00590 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 303 IPR001680 GO:0005515
Cpe05g00590 839 PRINTS G protein beta WD-40 repeat signature 548 562 IPR020472 -
Cpe05g00590 839 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Cpe05g00590 839 PRINTS G protein beta WD-40 repeat signature 453 467 IPR020472 -
Cpe05g00590 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 528 570 IPR001680 GO:0005515
Cpe05g00590 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 433 475 IPR001680 GO:0005515
Cpe05g00590 839 Gene3D - 516 724 IPR015943 GO:0005515
Cpe05g00590 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 673 696 IPR001680 GO:0005515
Cpe05g00590 839 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 390 - -
Cpe05g00590 839 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 439 524 - -
Cpe05g00590 839 SUPERFAMILY NHL repeat 625 830 - -
Cpe05g00590 839 PANTHER WD REPEAT DOMAIN 44 439 524 IPR040324 -
Cpe05g00590 839 Gene3D - 435 515 IPR015943 GO:0005515
Cpe05g00590 839 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 295 - -
Cpe05g00590 839 SUPERFAMILY WD40 repeat-like 261 697 IPR036322 GO:0005515
Cpe05g00590 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 394 IPR001680 GO:0005515
Cpe05g00590 839 SMART WD40_4 614 654 IPR001680 GO:0005515
Cpe05g00590 839 SMART WD40_4 388 426 IPR001680 GO:0005515
Cpe05g00590 839 SMART WD40_4 564 602 IPR001680 GO:0005515
Cpe05g00590 839 SMART WD40_4 430 466 IPR001680 GO:0005515
Cpe05g00590 839 SMART WD40_4 349 385 IPR001680 GO:0005515
Cpe05g00590 839 SMART WD40_4 655 696 IPR001680 GO:0005515
Cpe05g00590 839 SMART WD40_4 794 831 IPR001680 GO:0005515
Cpe05g00590 839 SMART WD40_4 525 561 IPR001680 GO:0005515
Cpe05g00590 839 SMART WD40_4 255 294 IPR001680 GO:0005515
Cpe05g00590 839 SMART WD40_4 469 507 IPR001680 GO:0005515
Cpe05g00590 839 PANTHER WD REPEAT DOMAIN 44 5 347 IPR040324 -
Cpe05g00590 839 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 358 427 - -
Cpe05g00590 839 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 347 - -
Cpe05g00590 839 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 535 838 - -
Cpe05g00590 839 Gene3D - 215 434 IPR015943 GO:0005515
Cpe05g00590 839 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 528 566 - -
Cpe05g00590 839 Pfam WD domain, G-beta repeat 359 384 IPR001680 GO:0005515
Cpe05g00590 839 Pfam WD domain, G-beta repeat 535 560 IPR001680 GO:0005515
Cpe05g00590 839 Pfam WD domain, G-beta repeat 440 465 IPR001680 GO:0005515
Cpe05g00590 839 Pfam WD domain, G-beta repeat 263 293 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00590 - - - csv:101206156 946.036
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00590 Cpe13g00320 CCT
Cpe05g00590 Cpe13g00320 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00590 Cpe-Chr5:3577026 Cpe05g00780 Cpe-Chr5:4844469 5.92E-66 dispersed
Cpe13g00320 Cpe-Chr13:2785369 Cpe05g00590 Cpe-Chr5:3577026 1.04E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00590 Cpe_Chr05 FPKM 4.336283 6.871974 4.041576 4.5634 5.885569 4.175224 7.853622 3.25763 3.099098 3.405114