Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00595 TTGAACAGCATTGTTGACAGTCTGAAGGACAGTGAACCTTTTCTGGATTCAGTGCTTCTGCATATGGGGAGCATGTACTCAACTTTAAAAAAGTTAGAGAAATCAGTGTCTGCGTACAAAAGGGCTATTGACATCATAGAGAAGAAAAGTGGCCAAGACAGTAGCTTTCTCATCACTCCAATTTTAGGGATGGCCAAAGTTCTTGGTACCAATGGAAGAACTACCAAAGCAGTAGAGTGTTACCATCGTGCAATTTCAATTTTGGAATCAACCAGAGGCTTTGAGGACGAGGATTTGGTTATACCTTTATTTAGTCTGGGCAACCTTTTGCTCAAAGAAGGAAAAGGCAAGGATGCCGAAACTTATGGAAAAGTTGGAATGGCTATGTATTCTCTGGCTAATGCGAAGTGTGCAAGAGGGGAAGCAGACGAAGCTATTACCTTATATAGAAGAGCTTTGCAGATTATAGAGGATTCAAATTATATGGCTTTAGATGACAGCGAGATGGAGAAGATGAGGATTGATTTGGCAGAACTACTACATGCTGTAGGAAGACGGAAGGAAGGCAGGGAACTTCTGGAAGAGAGCTTGTTGATCAATGAAAAGTCGAAAGGAAAAGACCATCCCAGCTCAGTGAAACACCTTGTAAACCTTGCAGCTTCTTATTCACGGTCAAAGAATTACGCCGAGGCCGAGCGTTTACTGCGAATCGGATTAAACATTATGGTAAAAGCAGTGGGACCAGATGATCAATCAATTACAAACCCAATGTTGAATCTCGCTGTCACTCTTTACAATCTAAAACGAGACGATGATGCCGAGCAACTTGCACTAGAAGTCTTGCGAATACGGGAAAATGCATTCGGAAAAGATTGCCTTCCTGTTGGTGAAGCTCTAGATTGTCTGGTTTCCATTCAGAGCAGGCTCGGAAAGGACGAAACCGAGCTACTGAAGCTGCTCAAGAGAATTCTAAGAATCCAGGAGAAAGCGTTCGGGTACGAGGCAAAAGAAGTCATTGACACCCTCAAGAAAATAGTATTCTACATGGATAAATTAGGATTGAAAGATGAGAAGTTTCCAGTTCAGAAACGACTGTCCATGCTTCGAATGAAATTCAAGAACCAGATGCAATACTAA 1137 42.04 LNSIVDSLKDSEPFLDSVLLHMGSMYSTLKKLEKSVSAYKRAIDIIEKKSGQDSSFLITPILGMAKVLGTNGRTTKAVECYHRAISILESTRGFEDEDLVIPLFSLGNLLLKEGKGKDAETYGKVGMAMYSLANAKCARGEADEAITLYRRALQIIEDSNYMALDDSEMEKMRIDLAELLHAVGRRKEGRELLEESLLINEKSKGKDHPSSVKHLVNLAASYSRSKNYAEAERLLRIGLNIMVKAVGPDDQSITNPMLNLAVTLYNLKRDDDAEQLALEVLRIRENAFGKDCLPVGEALDCLVSIQSRLGKDETELLKLLKRILRIQEKAFGYEAKEVIDTLKKIVFYMDKLGLKDEKFPVQKRLSMLRMKFKNQMQY 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3613108 3615899 + Cp4.1LG05g05880.1 Cpe05g00595 469800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00595 378 ProSiteProfiles TPR repeat profile. 16 49 IPR019734 GO:0005515
Cpe05g00595 378 ProSiteProfiles TPR repeat profile. 126 159 IPR019734 GO:0005515
Cpe05g00595 378 SUPERFAMILY TPR-like 170 311 IPR011990 GO:0005515
Cpe05g00595 378 SMART tpr_5 254 287 IPR019734 GO:0005515
Cpe05g00595 378 SMART tpr_5 16 49 IPR019734 GO:0005515
Cpe05g00595 378 SMART tpr_5 58 91 IPR019734 GO:0005515
Cpe05g00595 378 SMART tpr_5 170 203 IPR019734 GO:0005515
Cpe05g00595 378 SMART tpr_5 126 159 IPR019734 GO:0005515
Cpe05g00595 378 SMART tpr_5 212 245 IPR019734 GO:0005515
Cpe05g00595 378 Coils Coil 29 49 - -
Cpe05g00595 378 Pfam Tetratricopeptide repeat 18 47 IPR019734 GO:0005515
Cpe05g00595 378 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 7 368 - -
Cpe05g00595 378 Pfam Tetratricopeptide repeat 171 236 - -
Cpe05g00595 378 Gene3D Tetratricopeptide repeat domain 169 377 IPR011990 GO:0005515
Cpe05g00595 378 Gene3D Tetratricopeptide repeat domain 5 168 IPR011990 GO:0005515
Cpe05g00595 378 SUPERFAMILY TPR-like 18 201 IPR011990 GO:0005515
Cpe05g00595 378 Pfam Tetratricopeptide repeat 257 291 - -
Cpe05g00595 378 Pfam Tetratricopeptide repeat 127 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00595 - - - cmax:111491290 672.93
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1027 . . . . . . . . . . Cma02g01123 . . . . Cpe05g00595 . . . . . . . . Cla01g00037 Cam01g0035 Cec01g0034 Cco01g0036 Clacu01g0038 Cmu01g0035 Cre09g2471 . . Cone14ag0004 . . Csa05g00043 Chy09g01443 . . . Bda06g00789 . . . . . . Cmo02g01152 . . . . . . . Bhi12g00649 . . Lac11g0164 Hepe06g0796 . Lcy12g0140 . . . . . . . Lsi09g00017 . . Cme09g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009135 1 6 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00595 Cpe_Chr05 FPKM 19.447245 18.943466 11.03392 13.05961 14.240993 10.065914 12.940977 16.487946 15.944821 15.751105