Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00602 ATGGCGATTATCTCTGAATACGAAGAAAAGGAAGAAATCCCAAAGCCGAAGAAGCCTTCCTCCTCCTCCTCATCTCCACCGTCGTCTTCATCATCTAAGCCCTCTCAGTTCAGTGCCAACTTTGACCCTTCAAACCCTCTAGGGTTTTTAAACGAGGTTTTCGATTTTCTTGCCAAGGAGAGCGATTTTCTCTCCAGGGATAGAGTCGAGAAGGAAATCGAGACGGTAGTGCGTAGAGCTGTGGAGAAGAGAAAGAAGCACGTGGAGTCACTTGAGCTTAAAGGAAAGGCCGAGAAGAGGATAAAGGAAGAGGTGGGGAGTGTGAAGCAGGAAGCTGCGCCGGTGACTGTAAAGCAGGAGCCGAGGAATGTGGCATCACCGCCAGATGAGAAAGTGGATGTGAAGTTGGAGGAGAGCACCGAGGAGAAGAAAGAGGAGAATGGTCCAAGAGTTCCCAACAATGGTAATGGCCTTGATATGGAAAACTACTGTTGGACACAGACCCTCCAAGAGGTCAACATTAATGTACCAGTACCCAAAGGAACTAAGTCCAGGTTTGTGGTGTGTGAGATCAAGAAGAATCATCTCAAAGTTGGACTAAAGGGTCAACCACCAGTGATAGATGGAGAGCTTTATCAGATCGTTAAGCCAGATGATTGTTATTGGAGCATAGAGGATCAGAGCGTCATCTCTATTCTATTGACCAAGCACAACCAAATGGAGTGGTGGAAGTATTTAGTTAAGGGGGAACCTGAGATTGATACTCAGAAGGTTGAACCTGAGAACAGCAAACTGTCTGATTTGGATCCAGAGACTCGGCAAACAGTTGAAAAGATGATGTTCGATCAAAGGCAGAAGTCTATGGGACTCCCAACCAGTGATGAGATGCAAAAGCAAGATATTCTGAAGAAGTTCATGGCTGAGCATCCGGAGATGGATTTTTCGAGGGCAAAGATATCATAA 963 46.0 MAIISEYEEKEEIPKPKKPSSSSSSPPSSSSSKPSQFSANFDPSNPLGFLNEVFDFLAKESDFLSRDRVEKEIETVVRRAVEKRKKHVESLELKGKAEKRIKEEVGSVKQEAAPVTVKQEPRNVASPPDEKVDVKLEESTEEKKEENGPRVPNNGNGLDMENYCWTQTLQEVNINVPVPKGTKSRFVVCEIKKNHLKVGLKGQPPVIDGELYQIVKPDDCYWSIEDQSVISILLTKHNQMEWWKYLVKGEPEIDTQKVEPENSKLSDLDPETRQTVEKMMFDQRQKSMGLPTSDEMQKQDILKKFMAEHPEMDFSRAKIS 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3659305 3663994 + Cp4.1LG05g06030.1 Cpe05g00602 469807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00602 320 Gene3D - 154 281 IPR008978 -
Cpe05g00602 320 MobiDBLite consensus disorder prediction 104 157 - -
Cpe05g00602 320 MobiDBLite consensus disorder prediction 1 42 - -
Cpe05g00602 320 PANTHER NUCLEAR MOVEMENT PROTEIN NUDC 28 320 IPR037898 -
Cpe05g00602 320 ProSiteProfiles CS domain profile. 158 247 IPR007052 -
Cpe05g00602 320 SUPERFAMILY HSP20-like chaperones 149 262 IPR008978 -
Cpe05g00602 320 PANTHER NUCLEAR MIGRATION PROTEIN NUDC 28 320 - -
Cpe05g00602 320 Coils Coil 66 86 - -
Cpe05g00602 320 MobiDBLite consensus disorder prediction 18 42 - -
Cpe05g00602 320 MobiDBLite consensus disorder prediction 1 17 - -
Cpe05g00602 320 MobiDBLite consensus disorder prediction 124 149 - -
Cpe05g00602 320 CDD p23_NUDC_like 163 247 - -
Cpe05g00602 320 Pfam CS domain 162 236 IPR007052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00602 K25866 NUDC; nuclear migration protein NudC - csv:101222013 498.049
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00602 Cpe13g00313 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01179 Cpe-Chr2:10709957 Cpe05g00602 Cpe-Chr5:3659305 3.52E-18 dispersed
Cpe05g00602 Cpe-Chr5:3659305 Cpe20g00867 Cpe-Chr20:7797998 4.23E-16 dispersed
Cpe13g00313 Cpe-Chr13:2648928 Cpe05g00602 Cpe-Chr5:3659305 1.77E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g914 . . . . . . . . . . . . . . . Cpe05g00602 . . . . . . . . . . . . . . . . . . . . . Chy09g01436 . . . . . . Bpe12g00353 . . . . . . . . . . Cpe13g00313 Bhi12g00632 . . Lac11g0151 Hepe06g0789 . Lcy12g0130 . . . . . . . Lsi09g00024 . . Cme09g01982
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006262 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00602 Cpe_Chr05 FPKM 4.584893 5.072402 0.920502 0.573995 10.814851 12.204405 11.130647 0.388695 0.355741 0.396124