Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00603 CCGCCGGCCGCCGTTTTCAACCACCGTTTGTCGCCGCTGTTCTCCGCCATCGACTGCATTCGCAAGGCGCGTGTTCCGGAGGGAGTTCCAGAGCTTTATTCATCCATAATTCCAGAGCTCTGTTCGTCGGAGGGAGTTCGTCCTCTGCCGCGTCGGTGCTCCTGGATTTGGGATTTTCCGACGCTGTCTGGACTAATAAGGCTCCTCGACGGCGGCGGAATTGCGGCGGTGGTTATCTGTATCAGTTCTCCAATATCGATTGGATTCGCCGGTAGAGTGCCGAGTTTACTGAAATCTTCGTGTATTGAGCATTCAGAGGATTGCAGCTCTCAGTTAGTAACCTATTCTCCTGGGGAACTGGAGAAACAAGGGGTTCTTTTCTCGTTCTTCAAAGCTATGGAAATGTATTCTGAAACAGAGCATTTTCTTCCTTATTTCCAGAGTTACTATGAATTAGCAAAGGATTTCTGCAAAACCCACAAGCTTGATTCTCCACTGAGCTACATGGTTCAGACATCAACTGTATATGAATACAACATGGGCGGTGAAGGTGATCTATTCAAAGCTCCAGAGCCAATCATCGAGGAGTCGTTTTCGGGTCTCAATCCGATGATGGCTGCAATTTCGATGATGTCCTGCGCCAACACCAACATCTCCTTGGAGGGACTTAAAGATGCTGATTACTTTTTTAGTTCAAAAGATGTTGATTTGCTTCAAAATGATCAGCTCTTGAGTGAGGTTTACTATGAGTATGAGAAGGAACTCTTAGAAAAAGGAGCAATGCAAACACCACTGTCTGAAGTTTTCGATTTTAAGAATAAAATGTCAAAGACAGACGAAAATGAGCCAGTTTCTGATGCAATGCTTCAGAAGAGTGTAAGCTCGGGATGCTTAAGGTCGATGGACGGGATGCAAGGCCCTGCAATGAAGTCCAGTCTTGTGGATTTTAGCGGAGTGGATGTCGGTGAGGCCTACAGGATGCGACGGGCATTTAGCGAAGGCGATATCAAGACTCTTAGTAATGGCAATGGGAGCCAATTCTATTCTCCTCTCGAGCCACCGCCGCTGCTGGTCAGCAATTGCACCGCCGAAGAACGCAAAGAAAAGCTCTCGAGATACCGAAGTAAGAAGACCAAAAGGAACTTTGGCAGAAAGATCAAGTATGCTTGCAGAAAGGCTCTAGCTGACAGTCAACCAAGAATCAGGGGAAGGTTTGCCAGGACTGAAGAAGCTGAGATGAGGAGGTAA 1248 47.12 PPAAVFNHRLSPLFSAIDCIRKARVPEGVPELYSSIIPELCSSEGVRPLPRRCSWIWDFPTLSGLIRLLDGGGIAAVVICISSPISIGFAGRVPSLLKSSCIEHSEDCSSQLVTYSPGELEKQGVLFSFFKAMEMYSETEHFLPYFQSYYELAKDFCKTHKLDSPLSYMVQTSTVYEYNMGGEGDLFKAPEPIIEESFSGLNPMMAAISMMSCANTNISLEGLKDADYFFSSKDVDLLQNDQLLSEVYYEYEKELLEKGAMQTPLSEVFDFKNKMSKTDENEPVSDAMLQKSVSSGCLRSMDGMQGPAMKSSLVDFSGVDVGEAYRMRRAFSEGDIKTLSNGNGSQFYSPLEPPPLLVSNCTAEERKEKLSRYRSKKTKRNFGRKIKYACRKALADSQPRIRGRFARTEEAEMRR 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3667340 3670872 + Cp4.1LG05g06040.1 Cpe05g00603 469808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00603 415 Pfam CCT motif 366 408 IPR010402 GO:0005515
Cpe05g00603 415 PANTHER CCT MOTIF FAMILY PROTEIN 158 413 - -
Cpe05g00603 415 ProSiteProfiles CCT domain profile. 366 408 IPR010402 GO:0005515
Cpe05g00603 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 158 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00603 - - - cmos:111459344 554.288
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00603 Cpe09g00029 CCT
Cpe05g00603 Cpe13g00312 CCT
Cpe05g00603 Cpe14g00043 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00603 Cpe-Chr5:3667340 Cpe13g00143 Cpe-Chr13:1032339 2.99E-21 dispersed
Cpe10g00210 Cpe-Chr10:1205495 Cpe05g00603 Cpe-Chr5:3667340 3.09E-11 dispersed
Cpe13g00312 Cpe-Chr13:2637830 Cpe05g00603 Cpe-Chr5:3667340 3.55E-162 wgd
Cpe14g00043 Cpe-Chr14:235241 Cpe05g00603 Cpe-Chr5:3667340 1.10E-94 wgd
Cpe05g00603 Cpe-Chr5:3667340 Cpe09g00029 Cpe-Chr9:158013 6.31E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g913 . . . . Bpe03g00187 . . . . . . . . . Sed01g3497 Cpe05g00603 Cpe14g00043 Bhi01g01482 Tan01g0109 Cmetu06g0712 . . Mch10g0065 . . . . . . . . . . . . . . Chy09g01435 Cme06g01134 . . . . . . . . . . . . . . . Cpe09g00029 Cpe13g00312 Bhi12g00631 . . Lac11g0150 Hepe06g0788 . Lcy12g0128 . . . . . . . . . . Cme09g01980
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001051 2 2 3 3 2 2 4 2 2 1 2 2 4 2 2 3 2 4 4 2 2 2 2 2 2 2 2 8 8 1 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49520 PF06203 CCT 1.80E-16 CL0281 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00603 Cpe_Chr05 FPKM 2.258772 5.99276 1.843192 4.217858 8.519529 5.094401 8.157056 3.386865 3.175818 4.584869