Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00604 ATGCCGAGAAGTTCGAGGCACAAATCTACTAGACATGGGTTGAAGGATGCTAGGGAATCCTCAGACTCGGAAAATGATTCCAGTCTGAGGGATCGGAAGGGCAAAGAGAGTGGGAGTAGGGTATCGAAGGACTCTGCTTCTAGTGAGAAGCGCAGATTCGATTCTAAGGATACAAAAGACTTCTACGGCTCTGAGAATCTGGAAGCGGAAGAGCACGGACATTCCAAGCGCCGTAAGGAGAGGTATGATGAGGGAACGACTGATAGGTGGAATGGGGGAAGCGATGAGGAGCATGGTGTTCCTTCCAAAAAGTCAAAACCGTCGGTGGATTCGAAGAGCAAGAGGAGGGACGAGAGTGTTGTATTGCAGGGTGATGGCGAAGAACTCAAGAAGAATAGTGGAAAGGGCGAGGGAAGGCACCGCGAGTCGAGCCGAAAGGAGGGTCGGAATGGTGGAGGAGAAAGGGAAAGGGAGAGGGAGAGGGATAGGGATAGGGATAGGGATAGGGATAGGGAGAAGGAAAGAAAAGGAAGAGAAGGTAGAAGTGACAGGGTGGTTGCAAGCGAAGAACACCGAGTTGAAAAGCAAGTGGAAAGGAACACAGAGGACCTTTCCCATTCAAGATCTTCTGCATCCAAAGGGTGTCCTCTTCCTGTCTTCTTCTCCGGGAGTAGCCAAGAGAATGTGTTGCATAGCCCTGGATTAGAGAATCACCTGGAGGTACGAGTAAGGAAGAGAGCTGGTTCTTTTGATGGGGATAAACATAAAGATGATATAGGAGATGTGGAAAATAGACAGCTATCCACAAATAATGATGTTGTGAAGGATGGAAGACGAAAGAATGAGAAGCATAAGGATGAGAGAAATAGGGACAAGCACCGGGAAGATGCTGATAGAGATGGCAAGGAAAGATACGAGCAACCTGTAAAAGATCACATCAGCAGGTCAAATGGCAGAGATTCGAGAGATGAGAAGGATGCTATGGATGTGCATCATAAGAGAAACAAGCCTCAAGATAGTGATCTTGATCGAGAGGTAACGAAAGCCAAACGTGAGGGCGATCTAGATGCCATGCGTGATCAAGATCATGATCGCCACCATGTGTATGAACGTGATCATGATCAAGAGAGTAGGCGTAGACGCGATCGCGACCGCGACCGTGATCGGGATGGGAGACAGGATCGTAGTCGGAGCCGTGCTCGTGACCGTTACTCTGATTATGAATGTGACGTTGACCGTGATGGATCACATCTTGAGGATCAGTACACAAAATATGTCGATAGTAGGGGAAAGAAAAGATCTCCACATGATCATGATGATTCTGTTGATGCTAGATCTAAAAGTTTGAAGAATAGTCACCACCATGCAAATGAAGAAAAGAAGTCTTTAAGCAGTGATAAAGTGGACTCAGATGTTGAGAGAGGAAAGTCTCAATCACGATCTCGTCATGCTGATGTTAGTTTAAGCAGCCATAGACGAAAGAGTTCACCCAGTTCTCTGTCACGTGGTGGCACAGATGAATACAGGCATCAAGACCAGGAAGATTTGAGAGACCGATACCCAAAAAAGGAAGAGAGGTCCAAGTCCATTTCTACTAGAGATAAAGGTGTTCTGTCAGGAGTACAAGATAAGAGTTCCAAGTACACTTATTCGGATAAAACTGGTGAAACAGATGGTGGCAATGCTATTGAACTGTCACGAGATAGGTCTTTAAATTGTAAGAATGTTGACATTGAAGAAAGTGGACGAAGGCACAGCACTTCTATTGATGCCAAAGACCTCTCCTCTAATAAGGATAGGCATAGCTGGGAATTACAAGGAGAGAAGCCTCCACCTCCGATGGATGATTCATCTCTGGCAGAGCCCTATTTTAGCAAAGGTAGTCAGAGCAATCCATCACCATTCCATCCACGCCCTGGTTTTAGGGGTGGAATTGACATTCCTTTTGATGGTTCACTTGAAGATGATGGCAGACTCAATTCTAATAGCCGTTTCAGAAGGGGCAATGATCCGGGGTGGCAGAATATGTTGGATGGTTCAAGCCCTTCTCACTTACATGTATGGGATGGAAATAACGGCATGTTTAGGGATGAATCTCACATTTATAGCGGAGCTGAATGGGATGAGAACAGACAGATGATGAATGGTCGAGGATGGGAGTCCAAAGCTGAAATGTGGAAGAGACAGAGTGGTTCCCTGAAAAGGGAATTACCTTCCCATTTCCAGAAGGATGAGCGTTCAGTGCAAGATCCTGTTGAGGATGTATCAAATAGGGAGGTGTGTGATGAGAGTGCTGACACTATTTTGACAAAAACTGCTGAAATAAGGCCTAAGATTCCTTCTGTAAAGGAAAGCCCCAACACTCCTGAACTACTCTTTGAAACACCAACTCCTCTTGAACAGTCGATGGATGATAATTCTAAACTTAGTTGTTCATACCTTGCTAAGCTTAAGATTTCCACAGAACTTGCATATCCTGATTTGTACCACCAGTGTCAGAGATTAATGGATATTGAGCACTGCGCGACTGCAGATGAGGAAACTGTTTCTTACATAGTACTTGAGGGTGGCATGGGAGCAGTGTCCATCTCTTCAAATAGTGCGCATCAATCATTTCTCCATCTAAACAAGAGCTCGGTTTTTCAGCACGCAATGGACTTGTACAAAAAGCAGAGAATGGAAATGAAGGATATGCGGGTTATTTCTGGGGGAAAGGCATCCTCCGAAAGGACACTTGAAGAGAAGGGGATGCAAGTCGATTCTGAGGGGACGTCTTCCTCTGAGAGGAGACTTGAAGAGAACGGCTTCAATTTCAATAATGAAGAAGTTAAGGCTCCTGTTTCAACTGTTGATGAGGAAATAGCACAGCCACCTATCATAACCGCGAGCGATAAGGAAGTTGAGGCGACTGATGCATTGGGGGAACTGAAGGACTTGGCTTCAACTGCCAGTCAAGTGGTCAAGTGTCCTGAAAACCCAGAGGAGTCATTGCCAGTTACCAATTCAACGGAAGTGGTTACGATGGCTTTGGAGGAGCAGCAGCAGGCAAACTTAGACGCCGAAAAGGATACAATTGCTGTACCAGTTGACAACATACCAGTCAACGACACTGATAAATTGAGTAGCATCGAGATGAAGGGGATTGTGAAGAGCAAAGATTCAACGCGATGTGGAGTTGGTAAATCTTGTATTGAGAATGCAACTTTATCTTTTGGAGATGAAATAGGGGAGAGGTGTGAGGAGGAGGAGGAGGAGGAGGGGGGGTTAATGGCTGCTGTGTCAATAGGGTCTGAGGCTTTAATTTTGAGTCAGATACATCATTCTCCTGAAACTAATAACTCTGGGTCCATGGAAGATGTCCATTTTCAGGAGCCAAACGGATTAGCAGAGTGGGGAAACTTCGACCTTCATAAGCTAGAGCCTTTCTGCAAGCATACTGACAACAAAAACTCTGCTGTTCTTAGCCATAATCTTATGATCTCATGGCCTACTTCGTGTAATATTTACCTTGATCTTTCTGCCAAAGTTCCTTTTGGTCTTCTTACTTCGGTATCTCGAGAGCTTTTCTTTGCGTTCTTCGGCGGTGCAATTGCTGACCAGCAGCGGCGGTGGCTCGAGAGGAGAATAGAATTGGCTCCCATTGCCATTACTAAGAGTCTGCAGCAGAAGTCTAGAATCAATGGCAAAACCTCAACTTGTGAAAATGATTAA 3711 45.46 MPRSSRHKSTRHGLKDARESSDSENDSSLRDRKGKESGSRVSKDSASSEKRRFDSKDTKDFYGSENLEAEEHGHSKRRKERYDEGTTDRWNGGSDEEHGVPSKKSKPSVDSKSKRRDESVVLQGDGEELKKNSGKGEGRHRESSRKEGRNGGGERERERERDRDRDRDRDREKERKGREGRSDRVVASEEHRVEKQVERNTEDLSHSRSSASKGCPLPVFFSGSSQENVLHSPGLENHLEVRVRKRAGSFDGDKHKDDIGDVENRQLSTNNDVVKDGRRKNEKHKDERNRDKHREDADRDGKERYEQPVKDHISRSNGRDSRDEKDAMDVHHKRNKPQDSDLDREVTKAKREGDLDAMRDQDHDRHHVYERDHDQESRRRRDRDRDRDRDGRQDRSRSRARDRYSDYECDVDRDGSHLEDQYTKYVDSRGKKRSPHDHDDSVDARSKSLKNSHHHANEEKKSLSSDKVDSDVERGKSQSRSRHADVSLSSHRRKSSPSSLSRGGTDEYRHQDQEDLRDRYPKKEERSKSISTRDKGVLSGVQDKSSKYTYSDKTGETDGGNAIELSRDRSLNCKNVDIEESGRRHSTSIDAKDLSSNKDRHSWELQGEKPPPPMDDSSLAEPYFSKGSQSNPSPFHPRPGFRGGIDIPFDGSLEDDGRLNSNSRFRRGNDPGWQNMLDGSSPSHLHVWDGNNGMFRDESHIYSGAEWDENRQMMNGRGWESKAEMWKRQSGSLKRELPSHFQKDERSVQDPVEDVSNREVCDESADTILTKTAEIRPKIPSVKESPNTPELLFETPTPLEQSMDDNSKLSCSYLAKLKISTELAYPDLYHQCQRLMDIEHCATADEETVSYIVLEGGMGAVSISSNSAHQSFLHLNKSSVFQHAMDLYKKQRMEMKDMRVISGGKASSERTLEEKGMQVDSEGTSSSERRLEENGFNFNNEEVKAPVSTVDEEIAQPPIITASDKEVEATDALGELKDLASTASQVVKCPENPEESLPVTNSTEVVTMALEEQQQANLDAEKDTIAVPVDNIPVNDTDKLSSIEMKGIVKSKDSTRCGVGKSCIENATLSFGDEIGERCEEEEEEEGGLMAAVSIGSEALILSQIHHSPETNNSGSMEDVHFQEPNGLAEWGNFDLHKLEPFCKHTDNKNSAVLSHNLMISWPTSCNIYLDLSAKVPFGLLTSVSRELFFAFFGGAIADQQRRWLERRIELAPIAITKSLQQKSRINGKTSTCEND 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3669556 3679843 - Cp4.1LG05g06090.1 Cpe05g00604 469809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00604 1236 MobiDBLite consensus disorder prediction 1 217 - -
Cpe05g00604 1236 MobiDBLite consensus disorder prediction 247 675 - -
Cpe05g00604 1236 MobiDBLite consensus disorder prediction 533 556 - -
Cpe05g00604 1236 PANTHER OS05G0595500 PROTEIN 1 671 - -
Cpe05g00604 1236 MobiDBLite consensus disorder prediction 649 663 - -
Cpe05g00604 1236 MobiDBLite consensus disorder prediction 12 206 - -
Cpe05g00604 1236 MobiDBLite consensus disorder prediction 902 930 - -
Cpe05g00604 1236 MobiDBLite consensus disorder prediction 247 263 - -
Cpe05g00604 1236 PANTHER LOW PROTEIN: ZINC FINGER CCCH DOMAIN PROTEIN 672 1111 - -
Cpe05g00604 1236 PANTHER OS05G0595500 PROTEIN 672 1111 - -
Cpe05g00604 1236 MobiDBLite consensus disorder prediction 570 606 - -
Cpe05g00604 1236 MobiDBLite consensus disorder prediction 505 532 - -
Cpe05g00604 1236 PANTHER LOW PROTEIN: ZINC FINGER CCCH DOMAIN PROTEIN 1 671 - -
Cpe05g00604 1236 MobiDBLite consensus disorder prediction 272 490 - -
Cpe05g00604 1236 MobiDBLite consensus disorder prediction 733 761 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00604 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 - csv:101216579 914.064
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00311 Cpe-Chr13:2628285 Cpe05g00604 Cpe-Chr5:3669556 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g138 . . . . . . Bma07g01686 . . . . . . . . . Cpe05g00604 . . . . . . . . . . . . . . Cone8ag0242 Cone12ag0246 . Cone9ag0855 . . . . . Blo19g00369 Bda07g01930 Bda09g00013 Bpe08g01521 . . . . Cmo02g01141 Cmo15g01093 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004460 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00604 Cpe_Chr05 FPKM 12.383534 15.007856 19.577431 18.509228 21.129459 16.798569 20.835817 30.449905 30.096916 31.970457