Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00607 ATGACTTACCTGCAGGAGAAGATTGTGCGGTTTCCGGACCGGAGTTCAGATAAAACTTCAATGGGGTTATATTCTGCGGATAACACTTTAAATGTCGGAATGAATGGGACAAGAGCTGACTTAGTTTCAGAAAAGCCTCACAAAGAATTGGAAACTGGTTCTTACAGGATTAATAGAATTAAGAAATCCTTGAAATCATCTTCTTTCAATAAATTTATGTCCAAAAGTTTTGGAACACGAAGACAAGTACTTGATCCACAGGGGCCCTTTCTCCAGAAGTGGAACAAGATATTTGTGTTGTCTTGTGTGATTGCAGTCTCGTTGGATCCTTTGTTCTTTTATGTCCCTGTGATGGACGATGATCAGAAATGTCTTGGGTTGGATAAGAAGATGGAGATTACGGCTAGTGTGTTACGTTCATTCACCGACATATTTTATATATTACATATTGTTTTGCAATTTCGTACGGGATTTATTGCTCCTTCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGCAATAGCAAAGAGATATCTGTCGTCATACTTTTTGATCGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATCCTGATAATTGTTCCAAACATGAGAGGCTCGAGGTCGTTGAATACCAAGGACTTGCTGAAATTCATTGTTTTCTTCCAATACGTGCCTCGGTTTATTAGAATCTATCCTTTATATAAAGAAGTTACAAGAACATCTGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAACCTCTTTCTTTACATGCTGGCAAGTCATGTCTTTGGAGCATTCTGGTACTTGTTTTCGATAGAACGGGAAACTACATGCTGGCAGCAGGCCTGTCACAATATCAGCTGTGATTCTAATACACTATATTGTGATGTGGCTGTCAATCTACGAAATAACTCGTTTTTAAACATTTCATGTCCACTAGTGGATGGAGACGAAGTCAAACCTCCTTTTGATTTTGGGATATTTCTTGATGCTCTTAATTCTCGTGTTGTTGAGTCGATGAATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCACATACGTATGGGAAATTTTGTTTGCTGTTTTCATCTCCATCTCTGGCTTAGTCCTGTTTTCATTTCTCATTGGGAACATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTACTCCCTGAGAGCCTCCGGGAGCGAATCAGGAGGTACGAACAGTACAAGTGGCAGGAAACTAGAGGGGTTGATGAAGAGAATCTGGTTCGAAATCTTCCGAAAGATCTCAGAAGGGACATAAAACGCCATCTCTGCTTGTCTCTGCTAATGAGGGTACCGATATTTGAAAAAATGGACGAACAACTGCTGGATGCTATGTGTGACCGTCTCAAGCCAGTACTATACACAGAGGAAAGTTATATCGTTCGGGAAGGAGACCCAGTCGATGAGATGATCTTCATAATGCGTGGCAAGTTATTGTCTGTAACTACAAATGGTGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCAGGGGATTTCTGTGGAGAAGAGCTACTGACATGGGCTCTGGATCCACATTCCTCATCCAATCTACCAATTTCAACAAGAACTGTTCGAACTCTTTCAGAAGTTGAAGCATTTGCTTTGAAGGCAGATGACCTAAAGTTTGTAGCCTCACAGTTCCGTAGACTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCACAGCAATGGAGGACATGGGCAGCGTGTTTTATACAAGCAGCGTGGCGTCGATACAGAAGAAAGAAACACGAACAGGCTCTGTTGGAAGAAGAGAACAGGTTAAAAGATGCATTGGCCAAGACAGGTGGGAGTTCTCCTAGTTTAGGTGCTACCATCTATGCATCCAGATTTGCAGCTAACATCCTAAGAACGATTCGACGCACAAGCTCACGCAAGGCCAGGATTCCCGAGAGAATACCGCCCATGTTGCTTCAGAAACCAGCAGAGCCCGACTTTACCTCTGAAGAGAATAGTTGA 2148 42.32 MTYLQEKIVRFPDRSSDKTSMGLYSADNTLNVGMNGTRADLVSEKPHKELETGSYRINRIKKSLKSSSFNKFMSKSFGTRRQVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVMDDDQKCLGLDKKMEITASVLRSFTDIFYILHIVLQFRTGFIAPSSRVFGRGVLVEDAWAIAKRYLSSYFLIDILAVLPLPQVVILIIVPNMRGSRSLNTKDLLKFIVFFQYVPRFIRIYPLYKEVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQQACHNISCDSNTLYCDVAVNLRNNSFLNISCPLVDGDEVKPPFDFGIFLDALNSRVVESMNFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEILFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRVPIFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKKHEQALLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPMLLQKPAEPDFTSEENS 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3693807 3700885 - Cp4.1LG05g06080.1 Cpe05g00607 469812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00607 715 ProSiteProfiles cAMP/cGMP binding motif profile. 485 569 IPR000595 -
Cpe05g00607 715 Gene3D Helix hairpin bin 411 476 - -
Cpe05g00607 715 SUPERFAMILY Voltage-gated potassium channels 85 407 - -
Cpe05g00607 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 712 - -
Cpe05g00607 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 712 - -
Cpe05g00607 715 Coils Coil 637 657 - -
Cpe05g00607 715 Pfam Cyclic nucleotide-binding domain 505 596 IPR000595 -
Cpe05g00607 715 SMART cnmp_10 485 616 IPR000595 -
Cpe05g00607 715 Gene3D Jelly Rolls 483 603 IPR014710 -
Cpe05g00607 715 Gene3D - 95 409 - -
Cpe05g00607 715 CDD CAP_ED 485 616 IPR000595 -
Cpe05g00607 715 Pfam Ion transport protein 94 412 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe05g00607 715 SUPERFAMILY cAMP-binding domain-like 414 607 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00085 Cpe-Chr4:795745 Cpe05g00607 Cpe-Chr5:3693807 0 dispersed
Cpe05g00607 Cpe-Chr5:3693807 Cpe09g00037 Cpe-Chr9:226294 0 dispersed
Cpe07g00711 Cpe-Chr7:5979654 Cpe05g00607 Cpe-Chr5:3693807 0 dispersed
Cpe11g00844 Cpe-Chr11:6853912 Cpe05g00607 Cpe-Chr5:3693807 4.27E-09 dispersed
Cpe20g00053 Cpe-Chr20:241688 Cpe05g00607 Cpe-Chr5:3693807 1.09E-130 transposed
Cpe14g00051 Cpe-Chr14:285870 Cpe05g00607 Cpe-Chr5:3693807 7.83E-128 wgd
Cpe03g01786 Cpe-Chr3:13447030 Cpe05g00607 Cpe-Chr5:3693807 0 wgd
Cpe05g00607 Cpe-Chr5:3693807 Cpe08g00589 Cpe-Chr8:3888601 0 wgd
Cpe05g00607 Cpe-Chr5:3693807 Cpe09g00035 Cpe-Chr9:216208 2.81E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00607 K05391 - csv:101221781 1330.85