Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00609 ATGAACGGTAGTAGCACGAATGTGAATGGGAATCGGAACGGAGGAGGATTCAGTAACGCGGAATGGGAGCTCATTCGGAGGTACCACAGGAACGAGGCTGCTGAGAATCAGTGCACCTCTCAGCTTGTTAAGCATATTAAAGCTCCTGTTCATCTTGTATGGTCTCTGGTAAGGAGGTTTGATCAACCACAAAGATACAAACCCTTTGTTCGCAGATGTGTTGTAAAGGGAAACCTTGAGATAGGGACTCTCAGGGAAGTTGATGTGAAATCGGGGCTTCCTGCCACAACAAGTACAGAGAGATTGGAACTCCTTGATGATGATAAACACATCCTTAGCATGAGGATTGTTGGCGGAGATCACAGACTCAAGAATTACTCTTCAATCATTTCCCTGCATCCAGAAATCATTGATGGAAGACCTGGGACTTCGGTAATTGAATCATTTGTGGTGGATGTTCCTGAAGGAAACACAAAGGATGAGACTTGCTACTTTGTGGAAGCCTTCATCAAATGCAATCTCAAGTCACTTGCTGATGTTTCAGAGCGGCTAGCAGTGCATGATCGCACTGAGCCTCTGGAAAGGATTTAA 591 45.18 MNGSSTNVNGNRNGGGFSNAEWELIRRYHRNEAAENQCTSQLVKHIKAPVHLVWSLVRRFDQPQRYKPFVRRCVVKGNLEIGTLREVDVKSGLPATTSTERLELLDDDKHILSMRIVGGDHRLKNYSSIISLHPEIIDGRPGTSVIESFVVDVPEGNTKDETCYFVEAFIKCNLKSLADVSERLAVHDRTEPLERI 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3715581 3719653 + Cp4.1LG05g05990.1 Cpe05g00609 469814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00609 196 SUPERFAMILY Bet v1-like 37 180 - -
Cpe05g00609 196 CDD PYR_PYL_RCAR_like 38 182 - -
Cpe05g00609 196 PANTHER - 12 193 - -
Cpe05g00609 196 Gene3D - 7 191 IPR023393 -
Cpe05g00609 196 PANTHER ABSCISIC ACID RECEPTOR PYL3-LIKE 12 193 - -
Cpe05g00609 196 Pfam Polyketide cyclase / dehydrase and lipid transport 40 182 IPR019587 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00609 K14496 PYL; abscisic acid receptor PYR/PYL family - csv:101221554 356.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00609 Cpe-Chr5:3715581 Cpe17g01026 Cpe-Chr17:7757233 2.53E-95 dispersed
Cpe08g01240 Cpe-Chr8:8987900 Cpe05g00609 Cpe-Chr5:3715581 2.51E-60 dispersed
Cpe13g00309 Cpe-Chr13:2603592 Cpe05g00609 Cpe-Chr5:3715581 6.59E-127 wgd
Cpe14g00054 Cpe-Chr14:302269 Cpe05g00609 Cpe-Chr5:3715581 1.48E-99 wgd
Cpe03g01784 Cpe-Chr3:13431364 Cpe05g00609 Cpe-Chr5:3715581 2.87E-99 wgd
Cpe05g00609 Cpe-Chr5:3715581 Cpe08g00587 Cpe-Chr8:3867423 1.56E-83 wgd
Cpe05g00609 Cpe-Chr5:3715581 Cpe09g00040 Cpe-Chr9:239496 5.60E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g124 . . . . . . . . Cmo06g01046 . . . . . . . Cpe05g00609 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g01134 Cmo15g01095 . . Car06g00862 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000330 3 6 1 3 1 4 8 4 4 4 3 4 8 4 5 7 4 10 8 4 4 4 3 4 4 3 3 8 6 3 137
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00609 Cpe_Chr05 FPKM 17.971003 18.512451 16.087915 16.6626 11.356461 10.35436 11.735784 31.874577 32.229202 35.349918