Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00613 ATGATTATAAGTGCTGTTTCAACCCCAATTCAGAATGATGAGGGTTTCTTCATTTTTCGGAACATGGAAGCACAATCGTTGGAAAGCTTGCTTGAAGCTATTCCCGTCTTCTTTTTACATACTGAGAACTCCAAAATTGTTTCTACTAATATTTGTATAAGTCGTCACGTAAGAAATGGTCATCTTGATCTTGCCCAAACTCTGTTCGATGAAATGCCTGTAAGAAGCGTTGTCTCATGGAATATCATGATTTCTGGATACTCCAAAGTAGGACAGTATAGTGAAGCTCTCGAGCTGGCTTCAGGAATGCATTGCAGTAATGTAAAATTAAATGAGAAGACTTTTTCTACTTTGCTGAGTATTTGTGCACATTCAGGGTGTACACATGAGGGAAAACAATATCATTGTTTGGTTTTGCAATCTGGGTTGCAGATTTTTGAGCTTGTGGGAAGTGCATTGTTGTATTTCTATGCGAACACCGATGATATTAATGGAGCTAAGCTGGTTTTCGATGAGTTGCATGATAAGAATGATTTGTTATGGAGCTTGATGCTTGTAGGGTATGTAAAATGCAATTTGATGGATGATGCTTTTGATCTGTTTAAAAAAATACCTACTCGGGATGTGGTGGCGTGGACTACTTTGATATCAGGGTATGCCAGAAGCGAGCACAACTGCAGAAGGGCATTGGAATTATTCTGCTCCATGTTCACAAACGGTGAGGTCGAGCCTAATGAGTTCACTTTTGATTGCGTTGTGAGAGCTTGTGGGAGACTAAGATATTTGAGTCAGGGCAAGGTTGTTCATGGGATTTTAACTAAATATGGATTCCACTTCGATCATTCAATTTGTGGGTATGCAATTAGTGGTAGGATTGAAGAATCAAAGAAATTATTTGAAAAAATGACTCATAAAACTCTAATTTCATCGAACACTATGATAACTGTGTATTCTAGGAATGGTGAAATTGAAAAAGCTCTGAAATTATTTGAGTCAACGAAAGGTGAGGGAAATCCTGTGACATGGAATTCAATGATATCAGGCTATATTCAAAATCATCAGCATGAAGAAGCTTTGAGACTCTATCAAACCATGTGCAAAACATCAGTTGAGCGTTCTAGATCAACATTCTCTGTTCTGCTTCAAGCATGCACATGCCTAGGAACTATTCTATTGGCTACACTTCTGGGGATTCTTTCTGCATGTAGTCGTGTTGGTATGGTCAATGAAGGAATGAAAATTTTCCACTCTATGGAAAAGTGTTATGGTGTGATTCCAACTTTAGAACACTATGCATGTGTGGTGGATCTTCTTGGTCGGTCGGGACATCTGTATGAAGCTGAAGAATTTATCAGAAACATGCCAATTGAAGCCGATGGGGTTATTTGGGGAGCTCTGCTAAATGCTTGTTGGTTTTGGATGGACTTGGAATTGGGCGAGAGTGTGGCTAAGAAGATGCTTTGTTTGGACCCCAAAGCAATTTCTGCTTATGTTATTCTGTCTAATATATATGCTATATTAGGGAAGTGGGTAGAGAAGATCCATGTGAGGAGGCGATTGAGGAGCTTAAAAGTGAAAAAGGATCGTGGTTGTAGCTGGATCGATGTAAATAATAGAATTCATGTTTTCTCTGTAGGAGATAGGTCCCATCCTAACTGTAATGCTATTTATGCAACGTTGGAGCACATATTAGCACATGTAAACTCTATAGTTCAATTTGACCATGTTCCCAGATCAGTTTCGGAGGTATCAGCTGTTGTGATGAAATTAGGTGGTCGTTTGGTAACATCCGAGCAAAAGTGA 1803 39.1 MIISAVSTPIQNDEGFFIFRNMEAQSLESLLEAIPVFFLHTENSKIVSTNICISRHVRNGHLDLAQTLFDEMPVRSVVSWNIMISGYSKVGQYSEALELASGMHCSNVKLNEKTFSTLLSICAHSGCTHEGKQYHCLVLQSGLQIFELVGSALLYFYANTDDINGAKLVFDELHDKNDLLWSLMLVGYVKCNLMDDAFDLFKKIPTRDVVAWTTLISGYARSEHNCRRALELFCSMFTNGEVEPNEFTFDCVVRACGRLRYLSQGKVVHGILTKYGFHFDHSICGYAISGRIEESKKLFEKMTHKTLISSNTMITVYSRNGEIEKALKLFESTKGEGNPVTWNSMISGYIQNHQHEEALRLYQTMCKTSVERSRSTFSVLLQACTCLGTILLATLLGILSACSRVGMVNEGMKIFHSMEKCYGVIPTLEHYACVVDLLGRSGHLYEAEEFIRNMPIEADGVIWGALLNACWFWMDLELGESVAKKMLCLDPKAISAYVILSNIYAILGKWVEKIHVRRRLRSLKVKKDRGCSWIDVNNRIHVFSVGDRSHPNCNAIYATLEHILAHVNSIVQFDHVPRSVSEVSAVVMKLGGRLVTSEQK 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3736727 3741765 + Cp4.1LG05g06130.1 Cpe05g00613 469818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00613 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Cpe05g00613 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 110 IPR002885 -
Cpe05g00613 600 Pfam PPR repeat family 76 123 IPR002885 -
Cpe05g00613 600 Pfam PPR repeat family 338 384 IPR002885 -
Cpe05g00613 600 Pfam PPR repeat family 207 256 IPR002885 -
Cpe05g00613 600 Gene3D Tetratricopeptide repeat domain 392 575 IPR011990 GO:0005515
Cpe05g00613 600 Gene3D Tetratricopeptide repeat domain 1 143 IPR011990 GO:0005515
Cpe05g00613 600 Gene3D Tetratricopeptide repeat domain 144 265 IPR011990 GO:0005515
Cpe05g00613 600 Gene3D Tetratricopeptide repeat domain 272 390 IPR011990 GO:0005515
Cpe05g00613 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 243 IPR002885 -
Cpe05g00613 600 Pfam PPR repeat 398 421 IPR002885 -
Cpe05g00613 600 Pfam PPR repeat 47 75 IPR002885 -
Cpe05g00613 600 Pfam PPR repeat 283 303 IPR002885 -
Cpe05g00613 600 Pfam PPR repeat 309 337 IPR002885 -
Cpe05g00613 600 Pfam E motif 475 535 IPR046848 -
Cpe05g00613 600 TIGRFAM PPR: pentatricopeptide repeat domain 398 427 IPR002885 -
Cpe05g00613 600 TIGRFAM PPR: pentatricopeptide repeat domain 340 371 IPR002885 -
Cpe05g00613 600 TIGRFAM PPR: pentatricopeptide repeat domain 78 112 IPR002885 -
Cpe05g00613 600 TIGRFAM PPR: pentatricopeptide repeat domain 311 332 IPR002885 -
Cpe05g00613 600 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 394 547 - -
Cpe05g00613 600 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 203 - -
Cpe05g00613 600 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 130 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00613 - - - cmax:111490947 553.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00613 Cpe-Chr5:3736727 Cpe03g00167 Cpe-Chr3:835756 1.03E-06 dispersed
Cpe09g00817 Cpe-Chr9:7556019 Cpe05g00613 Cpe-Chr5:3736727 1.09E-11 dispersed
Cpe12g00229 Cpe-Chr12:1521226 Cpe05g00613 Cpe-Chr5:3736727 4.51E-06 dispersed
Cpe05g00613 Cpe-Chr5:3736727 Cpe02g00151 Cpe-Chr2:777503 1.72E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g871 Blo06g01077 . . . . . . . . . Cma02g01103 . . . . Cpe05g00613 . . . . . . . . Cla01g00059 . . . . . . . . . . . Csa05g00067 Chy09g01423 . . . . Bda15g00777 . Bpe12g00374 . . . Cmo02g01130 . . . . . . . Bhi12g00617 . . . Hepe06g0775 . Lcy12g0117 . . . . . . . Lsi09g00038 . . Cme09g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004896 1 4 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00613 Cpe_Chr05 FPKM 0.410828 0.0 4.079977 2.337369 21.224796 23.755217 20.130951 1.096086 1.333406 0.800411