Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00615 GCCATTGATGATTTTGACATTATTCTGCCTGCCTCTGCCTCTGCCTCTGCCTTGCCTCGCTCACTGCATAATCCTCTTCCTATTATTACCCATCCCTCTCATGTTCTCTATCTTCCTGTTTTTGTGCTGCCTCTAATCTTTGGGGGGAACATGGACAACCATCGTAGCCAGCAACAAGCTAAAACAACTCCACTAGAGTCTGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACGATGACAGCACAGGAGGAAGATCTCATCCATAGAATGCATAAGCTGATTGGAGATAGGTGGGATCTGATAGCAGGCAGAATTCCAGGGCGTAAACCAGAAGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGCAGTGAGAAGAAGAGGGTGA 399 46.12 AIDDFDIILPASASASALPRSLHNPLPIITHPSHVLYLPVFVLPLIFGGNMDNHRSQQQAKTTPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFAVRRRG 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3746398 3747936 + Cp4.1LG05g06140.1 Cpe05g00615 469820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00615 132 SMART sant 76 124 IPR001005 -
Cpe05g00615 132 Pfam Myb-like DNA-binding domain 81 119 IPR001005 -
Cpe05g00615 132 SUPERFAMILY Homeodomain-like 81 120 IPR009057 -
Cpe05g00615 132 Gene3D - 80 124 - -
Cpe05g00615 132 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC3 51 129 - -
Cpe05g00615 132 CDD SANT 79 118 IPR001005 -
Cpe05g00615 132 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 51 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00615 K09422 MYBP; transcription factor MYB, plant - csv:101221077 159.844
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00615 Cpe13g00305 CCT
Cpe05g00615 Cpe13g00305 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00615 Cpe-Chr5:3746398 Cpe02g01742 Cpe-Chr2:14243703 1.63E-12 dispersed
Cpe13g00305 Cpe-Chr13:2539988 Cpe05g00615 Cpe-Chr5:3746398 3.27E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g869 . . . . . . . . . . Cma02g01101 Cma15g01040 . . . Cpe05g00615 . . . . . . . . Cla01g00061 Cam01g0060 Cec01g0061 Cco01g0061 Clacu01g0061 Cmu01g0061 Cre09g2447 . . . . . Csa05g00069 Chy09g01421 . . . . . . . . . . Cmo02g01127 Cmo15g01100 . . . . . Cpe13g00305 Bhi12g00613 . . Lac11g0135 Hepe06g0771 . Lcy12g0115 . . . . . . . Lsi09g00040 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002016 4 2 0 1 4 2 2 1 2 1 2 2 2 1 1 2 2 6 2 1 1 1 2 0 2 2 2 3 2 3 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49521 PF00249 Myb_DNA-binding 9.00E-07 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00615 Cpe_Chr05 FPKM 7.071003 7.115845 8.368344 8.232679 27.639748 25.919312 24.098486 4.419591 5.354681 5.625309