Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00620 ATGAGCTTCAAAAGGGACCTTGAGCTTGTCGTCTTTGTTTTCTCTGCAGTCTTCTGGTTTGCAGCGAACGTTTATCCGGTGATGTCGGAGCCCATCAAAGACAAGGAAGCTTTGCTTAATTTTCTCAACAAGATGGATCACTCACACTCGCTCAATTGGAAGAAGAGCACTTCTTTGTGCAAAGAATGGATGGGAGTTCAATGCAACAATGATGAATCCCAAGTTGTAGTTCTTAGATTGGCTGAAGTTGGCTTACACGGTTCGATCCCAATCAACACTCTCGGTCGACTATCGGGGCTTGAAACTCTTAGCCTTGGATCAAATTACATATCAGGGCCTTTCCCTTCTGACTTCCTAAAGCTGAGAAATCTCAGTTCACTCTACTTGCAAAACAACAAGTTCTCCGGTCCATTGCCATTGGATTTCTCTGTATGGAAGAATCTCAACATCATTGATCTGTCAAACAATGCCTTCAATGGGAGCATCCCTCGCTCGATTTCGAACACGACACATCTAACGACATTGAACCTTGCCAATAACTCACTCTCTGGTGAGATTCCAGACAACCTTCCTAGATTGCAAGAGTTGGATCTTTCAAACAACAATCTCACAGGGTATGTCCCTCAGTCCCTTAAAAAATTTCCAAGTTGGGCATTCTATGGTAACAACCTCGTGCTAAAAAATGCCGTTTCTCCGGCTCACGAACCGGTGCCGAGTACTCGACCATTGAAGAAAGGCACAACATCACTTGGTGAAGCAGCAATTTTAGGCATTATAATTGGAGGTTCTGCAACGGGGTTAGTCATAGCAGTCATTTTGATGGTTATATGTTGCTCAAACAGAGGAAGACTAAAAAACAAAGCCTCATCAAAGCTGGACAAGCAAGAACAGTTTGTGAACAAAAGGGTGTCTGAGACACAAAACAACAACCTCAAGTTTTTTCGGAGTCACGGCCTTGAGTTCGACTTGGAGGACTTGTTGAGGGCGTCTTCCGAGGTGCTCGGGAAGGGGATGTCGGGGACGACGTATAAGGCGACACTAGAAGACGGCAATGCCGTGGCAGTGAAGAGGTTGAAGGAAGTGTGTGTTTCAAAGAAGGAATTTGAGCAACAGATGGAGGTGCTTGGGAGCATTGATCATGAAAATGTGTGTGGTCTAAGGGCATATTATTATTCAAAGGATGAGAAACTCATGGTGTTTGAGTTCTATCAACATGGAAGTGTCTCTGCAATATTGCATGTTGCGAGAGAGAAAGGGCAGTCACCTCTAGATTGGGAAACTCGGCTCCGAATCGCCATTGGCGCAGCCAGAGGAATCGCTCACATCCACTCTGAAGCCTGCGGCAAGCTCGTCCATGGCAACATCAAGGCCTCAAACGTTTTTCTCAACTCCGCCGGTTACGGATGCATTGCCGACGTCGGCGTCGCCGCTCTGATGAACCTTATGGCCCCAGCGGCAACCAGAGCCGCCGGATACCGCGCTCCCGAACTCAAAGATTCACGCAAAGCGTCTCAAGCCTCCGATACCTACAGCTTCGGCGTCGTGCTTCTGGAACTCCTCACTGGAAAATTTCCACTGCATACGAAGTGTGGCGGCGGCGGCGGCGGGGATCAGATCATCCACCTTGTGCGGTGGGTGAACGCGGTGGTTCGAGAGGAGTGGACGGCGGAGGTGTTTGATGTGGAGCTTTTGAGATATCCGAACATAGAGGAGGAGATGTTAGAGACGCTGCAAATAGCGCTATCTTGTGTAGGAAGAGTTCCGGATGATCGGCCGTCAATGGCGGATGTGGCAGCACGGTTAGAGGGAGTTCGCCAGGTGAGCGGCGGAGGAAGCCAACCGGCGCCGCCGCCAGCATTGCCACGTGGAGCGGAGGAGGTGATCCAGATTCAGGTGAACGTGGACGAGGGTGAAGAGGGAGCTCCGTCGAAATCGAATTGA 1941 49.3 MSFKRDLELVVFVFSAVFWFAANVYPVMSEPIKDKEALLNFLNKMDHSHSLNWKKSTSLCKEWMGVQCNNDESQVVVLRLAEVGLHGSIPINTLGRLSGLETLSLGSNYISGPFPSDFLKLRNLSSLYLQNNKFSGPLPLDFSVWKNLNIIDLSNNAFNGSIPRSISNTTHLTTLNLANNSLSGEIPDNLPRLQELDLSNNNLTGYVPQSLKKFPSWAFYGNNLVLKNAVSPAHEPVPSTRPLKKGTTSLGEAAILGIIIGGSATGLVIAVILMVICCSNRGRLKNKASSKLDKQEQFVNKRVSETQNNNLKFFRSHGLEFDLEDLLRASSEVLGKGMSGTTYKATLEDGNAVAVKRLKEVCVSKKEFEQQMEVLGSIDHENVCGLRAYYYSKDEKLMVFEFYQHGSVSAILHVAREKGQSPLDWETRLRIAIGAARGIAHIHSEACGKLVHGNIKASNVFLNSAGYGCIADVGVAALMNLMAPAATRAAGYRAPELKDSRKASQASDTYSFGVVLLELLTGKFPLHTKCGGGGGGDQIIHLVRWVNAVVREEWTAEVFDVELLRYPNIEEEMLETLQIALSCVGRVPDDRPSMADVAARLEGVRQVSGGGSQPAPPPALPRGAEEVIQIQVNVDEGEEGAPSKSN 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3765216 3769481 + Cp4.1LG05g06100.1 Cpe05g00620 469825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00620 646 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Cpe05g00620 646 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Cpe05g00620 646 Gene3D Transferase(Phosphotransferase) domain 1 404 610 - -
Cpe05g00620 646 PRINTS Leucine-rich repeat signature 172 185 - -
Cpe05g00620 646 PRINTS Leucine-rich repeat signature 190 203 - -
Cpe05g00620 646 ProSiteProfiles Protein kinase domain profile. 328 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g00620 646 Pfam Leucine Rich Repeat 192 214 IPR001611 GO:0005515
Cpe05g00620 646 Gene3D Ribonuclease Inhibitor 33 145 IPR032675 -
Cpe05g00620 646 SUPERFAMILY Protein kinase-like (PK-like) 331 602 IPR011009 -
Cpe05g00620 646 Pfam Leucine rich repeat 88 134 IPR001611 GO:0005515
Cpe05g00620 646 PANTHER OS05G0588300 PROTEIN 21 607 - -
Cpe05g00620 646 SUPERFAMILY L domain-like 42 216 - -
Cpe05g00620 646 MobiDBLite consensus disorder prediction 605 624 - -
Cpe05g00620 646 Gene3D Ribonuclease Inhibitor 146 232 IPR032675 -
Cpe05g00620 646 PANTHER LRR RECEPTOR-LIKE KINASE 21 607 - -
Cpe05g00620 646 Pfam Protein kinase domain 331 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g00620 646 Gene3D Phosphorylase Kinase; domain 1 293 402 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00620 Cpe13g00125 CCT
Cpe05g00620 Cpe13g00125 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00371 Cpe-Chr5:2111525 Cpe05g00620 Cpe-Chr5:3765216 0 dispersed
Cpe05g00620 Cpe-Chr5:3765216 Cpe13g00125 Cpe-Chr13:876777 0 dispersed
Cpe02g00813 Cpe-Chr2:5206484 Cpe05g00620 Cpe-Chr5:3765216 4.10E-66 transposed
Cpe14g00065 Cpe-Chr14:361080 Cpe05g00620 Cpe-Chr5:3765216 8.61E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62407 PF00069 Pkinase 7.80E-32 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00620 - - csv:101219980 1026.16