Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00621 ATGGAATCCAGATCCCGGAGGCGGGTCCTCATCGACGACAATTCTCCTGCCACCGGAGTTGTGGACCGACGCGACGCCGTCGGGACCGCTGACGATGTGCAGGGACTGAAATTTCGACCCTCCGATGGGAATGTGACCGAAGATCAGGAGCTCTTCATGGGCATCAAGGTCCGTCGAAAAGACTCGCTTCATCATGATTACAAGGGGGATTACATTGATGTTCCCTCGAATCAATTCTTGATGAAAATCCTGCAAAAGCAAGGTGAAGAGAGTGTGCTTTTTGCAGACAAAGTTTTGAAGTTCACTGCTTCCGGGAAGATGAAAAGACGGATTCTTTTAATAACAGAGTTTGCCATTTATATCATTGACCCAGAAACTGATACCCTTAAAAGGAGGGTTGCCCTGGCTGCTGTGGATAAGATATGTTTAAGTGAACTAAGCGATAACTTCTATGCAATTGTAATTCCAACCGAGTATGATATACTGATGGCAAGTACTCGGAAAACAGAGATCGTAACAGTTTTGGTTGACGCCTTTAAGAGTTCCTCTGATTATGAACTTGAGATTGTATTCTCCAACAGGTTTGTGTACAGTGCAGGTGGTGAACTGATAAAAGAAGTTCAATTCGAGGAAGTCGAAGGTGGTGTGAAAACAAGAATTTCGAGGAAGGAGGAGTGA 678 44.99 MESRSRRRVLIDDNSPATGVVDRRDAVGTADDVQGLKFRPSDGNVTEDQELFMGIKVRRKDSLHHDYKGDYIDVPSNQFLMKILQKQGEESVLFADKVLKFTASGKMKRRILLITEFAIYIIDPETDTLKRRVALAAVDKICLSELSDNFYAIVIPTEYDILMASTRKTEIVTVLVDAFKSSSDYELEIVFSNRFVYSAGGELIKEVQFEEVEGGVKTRISRKEE 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3770043 3772588 - Cp4.1LG05g06180.1 Cpe05g00621 469826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00621 225 Pfam Unconventional myosin tail, actin- and lipid-binding 49 213 IPR010926 GO:0003774|GO:0016459
Cpe05g00621 225 ProSiteProfiles Class I myosin tail homology (TH1) domain profile. 56 225 IPR010926 GO:0003774|GO:0016459
Cpe05g00621 225 PANTHER OS01G0621700 PROTEIN 5 223 - -
Cpe05g00621 225 PANTHER - 5 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00621 - - - csv:101220218 388.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00302 Cpe-Chr13:2521103 Cpe05g00621 Cpe-Chr5:3770043 2.43E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g858 . . . . . Bpe07g01003 . . . . Cma02g01095 . . . . Cpe05g00621 . . . . . . . . Cla01g00066 Cam01g0064 Cec01g0065 Cco01g0065 Clacu01g0065 Cmu01g0065 Cre09g2443 . . . . . . . . . . Bda06g00772 . . Bpe12g00366 . Bma12g01188 . Cmo02g01121 . . . . . . . Bhi12g00605 . . Lac11g0125 Hepe06g0765 . Lcy12g0103 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008470 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 0 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00621 Cpe_Chr05 FPKM 0.368736 0.137996 0.727523 0.514439 1.770155 1.335386 1.588414 0.171028 0.201884 0.181