Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00622 ATGGAGCAAGACAATGAAGAAGAAGTGAAGACGTTTAAGGACTTGGGGATATGTGAGCAATTGGTTGAGGCATGTGATAGTTTAGGCTGGAAAAATCCATCCAAGATTCAGGCTGAGGCCATTCCTCATGCGCTAGAAGGAAAGGATTTAATTGGACTTGCACAGACTGGTTCTGGAAAAACTGGAGCTTTTGCTCTTCCCATTTTGCAAGCCCTTTTGGAGGCTCCTCAAGCTTTTTTTGCATGTGTACTTTCTCCCACAAGGGAGCTTGCAATTCAGATTGCTGAGCAATTTGAAGCTTTAGGGTCTGGCATTGGTATTAAGTGTGCTGTGCTTGTTGGAGGTGTAGACATGGTGCAGCAAGCAATTAACTTGGCAAAACGGCCACATATTGTCGTTGGGACACCTGGGCGCCTTGTGGACCATCTATCCAATACAAAAGGTTTTTCCCTCCGCACATTGAAATATTTGGTCCTTGATGAGGCAGACAGGTTATTGAATGAAGACTTCCAAAAGTCAATAGATGAAATTTTAGATGAAATTCCTCGTGAGAGGAGAACGTATCTATTTTCTGCTACTATGACTAAAAAGGTTCGGAAACTTCAAAGGGCCTGCTTAAGGAATCCTGTTAAGATTGAAGCGGCAAGCAAATATTCCACAGTAGACACACTGAAGCAAGAGTATTGTTTTATCCCTGCGAAATATAAGGAATGTTATCTTGTCTATATCTTAACTGAGATGTCTGGTTCTACATCAATGGTCTTCACTCGAACCTGTGATGCTACTCGCCTTCTATCATTGATTCTTCGAAATCTTGGATTAAGAGCCATTCCCATAAGTGGTCAGATGACCCAGGCAAAGAGACTAGGAGCCTTAAATAAGTTCAAGGCTGGAGAGTGCAACGTTCTTATCTGCACTGATGTCGCCAGCAGAGGACTTGATATTCCATCTGTGGATATGGTCATAAATTATGATATTCCTTCAAATTCCAAGGATTACATACATAGAGTGGGAAGAACTGCTCGTGCAGGTCGTTCTGGGGTTGCCATTTCGTTAGTTAACCAGTATGAGTTAGAGTGGTACATACAGATAGAGAAGCTCATAGGGAAAAAACTACCACAGTTTTCGGCACAGGAAGAGGAGGTTTTGATGTTGTTCGATCGTGTGGCCGAGGCGAAGAGAATATCTATTACGAAAATCAAAGAAAGTGGTGGCAAAAAGAGAAGGAGAGGTGGAGGAGATGACGACGACAACGACGACAACGACGTTGAAAAGTATCTACGTCTCAAGAGTGGAAAGAACGGGAAGATGTCGAAGAAGTTTAATAAAAAACGAGTCTAA 1341 42.51 MEQDNEEEVKTFKDLGICEQLVEACDSLGWKNPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEAPQAFFACVLSPTRELAIQIAEQFEALGSGIGIKCAVLVGGVDMVQQAINLAKRPHIVVGTPGRLVDHLSNTKGFSLRTLKYLVLDEADRLLNEDFQKSIDEILDEIPRERRTYLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYKECYLVYILTEMSGSTSMVFTRTCDATRLLSLILRNLGLRAIPISGQMTQAKRLGALNKFKAGECNVLICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFSAQEEEVLMLFDRVAEAKRISITKIKESGGKKRRRGGGDDDDNDDNDVEKYLRLKSGKNGKMSKKFNKKRV 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3774051 3780046 + Cp4.1LG05g06110.1 Cpe05g00622 469827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00622 446 Pfam DEAD/DEAH box helicase 35 201 IPR011545 GO:0003676|GO:0005524
Cpe05g00622 446 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 158 166 IPR000629 -
Cpe05g00622 446 Pfam Helicase conserved C-terminal domain 239 344 IPR001650 -
Cpe05g00622 446 Gene3D - 218 390 IPR027417 -
Cpe05g00622 446 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 383 IPR001650 -
Cpe05g00622 446 PANTHER BNAC02G41920D PROTEIN 4 433 - -
Cpe05g00622 446 SMART helicmild6 263 344 IPR001650 -
Cpe05g00622 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 365 IPR027417 -
Cpe05g00622 446 MobiDBLite consensus disorder prediction 402 431 - -
Cpe05g00622 446 Gene3D - 1 215 IPR027417 -
Cpe05g00622 446 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 212 IPR014001 -
Cpe05g00622 446 MobiDBLite consensus disorder prediction 402 446 - -
Cpe05g00622 446 CDD SF2_C_DEAD 224 353 - -
Cpe05g00622 446 CDD DEADc_DDX47 11 213 IPR044765 GO:0005524
Cpe05g00622 446 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 10 38 IPR014014 GO:0003724
Cpe05g00622 446 SMART ultradead3 29 227 IPR014001 -
Cpe05g00622 446 PANTHER RNA HELICASE 4 433 - -
Cpe05g00622 446 MobiDBLite consensus disorder prediction 432 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00622 K14777 DDX47, RRP3; ATP-dependent RNA helicase DDX47/RRP3 [EC:3.6.4.13] - csv:101219259 786.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00762 Cpe-Chr1:4446599 Cpe05g00622 Cpe-Chr5:3774051 6.22E-71 dispersed
Cpe05g00622 Cpe-Chr5:3774051 Cpe05g01036 Cpe-Chr5:6800598 4.09E-120 dispersed
Cpe11g00330 Cpe-Chr11:1758701 Cpe05g00622 Cpe-Chr5:3774051 1.38E-62 dispersed
Cpe11g00754 Cpe-Chr11:6022306 Cpe05g00622 Cpe-Chr5:3774051 8.17E-14 dispersed
Cpe19g01152 Cpe-Chr19:7722069 Cpe05g00622 Cpe-Chr5:3774051 4.95E-55 dispersed
Cpe01g00105 Cpe-Chr1:612065 Cpe05g00622 Cpe-Chr5:3774051 1.34E-67 transposed
Cpe01g01649 Cpe-Chr1:10138280 Cpe05g00622 Cpe-Chr5:3774051 4.12E-07 transposed
Cpe08g00795 Cpe-Chr8:6315834 Cpe05g00622 Cpe-Chr5:3774051 1.66E-46 transposed
Cpe06g00939 Cpe-Chr6:7556147 Cpe05g00622 Cpe-Chr5:3774051 6.88E-82 transposed
Cpe13g00167 Cpe-Chr13:1253272 Cpe05g00622 Cpe-Chr5:3774051 9.62E-53 transposed
Cpe13g00299 Cpe-Chr13:2494949 Cpe05g00622 Cpe-Chr5:3774051 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g359 . . . . . . Bma07g01642 . . . Cma02g01094 . . Car15g01094 . . Cpe05g00622 . . . . . . . . . . . . . . . . . . . . . . . Blo19g00316 . Bda09g00047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005266 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 2 1 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00622 Cpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0