Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00623 ATGGAGATCGATGGGCTATGTGTTATCTGCGCTGGTCTCGGAATCGTCGAAGAGGACGACAATGGTAATCGGATCGGTTACTCCAAGAGCGAATACTGTTTAGATAATTTGAAGGATTTGCTAAGATTCTTGAGACGAGATGACCCGCAAACTCGTGATGTTTTTAAGCAAGTGTGTAAATGGAACATTGTGGCTAAAGATCTGATACCCATTATTGAATACTGTCAAGATGACCGTAATGCAGTCTTAAACGCAGTGAAGATTTTGGTGTTCCTCACAATGCCCGTTGAACCCACGTCAAATGATATTGCACAACAGATTGAATATTTGTGGGGCTTGAAGTCCTTAATTACATGCTGTAATGTTGTTGCCGTAGCTGTTTCACTTTTGGAGAGTCCGCTGGAAAATCTGGATTGTTATGAATTGTCTTCTACAAACAGTGAAACATTCTCAGAAGACGACTGGAAATTGGTGCAGCTGGTTATGACACTCTTCCGAAATGTTTTGGCTATTCAAGAAATCTCATTGCAGCAAAAGGCTGATGGATCAGCTTGTCAGTTAATATTGCTCAGAGACAAATTTCTGGAAGGTTTATTCCGGGAGAATGTAATGGACATAATATTGGTGATAACGCAACATATTGATGGCTCTTGCAGCCATCTCCGTCAAGACAAATTACTTTTTCTGGAAATATTTTATTTCATATTTATGGGACAAGAACCAGAGTTAATTGCAAAAGTATCTCAAAATAGCAACGAGGATAATGTAGAAACTGTATCTTCCGCCAATAGTCTGAAGTCTCTGATGGAGGAAGATAGAAGGAAGCTTTCTAGATCATACAATATGAACCGCCATTCTCAGTTCAGTGGAACTTTTACTCGACATACCTTGGATGGTTCGAAGTTAGTACTCAAAGGAAAGCCGTCGCCGACTTCTTGTAACAGTCTTAAACAACCTAAAGTTTGTCGGGGTCCAATAAAAAAGATTGCATGGGACCATGGACGATTAACTTCAAAAAACAGCAAACTTCTGCGGTTACTTCATGATTTTATCAACCAGTTTCTTTCAGGCGGCTACAATGCTTTGATGCAGTTGGTTCATGAAGATATTGAAAAGGAACATCATTCCATCCAGAACAACGATGTGGTTGTTTTTTTTCAGGTGGCTCAGTTTGCTGTTTCTTTTCAGTATCACAAGTTCTCAACTTCAAAGTCAATTGAAGCTGATACTACTGAGGCTCAAACAGAACATGCTGATTCCACATTTTTCCAAGGTAACATGTGCGGTCCAATAGCTGCAACAATGAACGAGGCAATGTTTCAGCTAGTTGTTACAAAATGGCGCTATGCATTTGAAGGCTTAAAGGAAACTAGTGATTTTAAGTTTCTGTCTGCAGCTGGCTCTCTGATGAAAAATATGATTTGCATGTTAGATTTGGTGTTAAAGTTATTGCCAGAAGATTCGAAGGAACCTCAAACAGCTCGTATTCTACTTTACAAATTATTTTATGATCAGACAGATCAAGGGATCACTCAGTTCCTCTTAAATTTGCTCAAATCATTCAACACTCACAAACAACCCAAAAGTGATCTTGCAGATTTAGTTGAGATGATCTACAAAGTTGTACAGCTCATGGAGGACCTCCAAGCACGTGGAACACTTCGGGTTTCTAAAAAATCAAGGAGGGGAAGAAAAGCAAAGTCAGCTAGAATCAGACAGTCAGAAGATCAGGTAGCTGGGAATAAGACGGCCATAACCCAGAATGAGAAATCAATAGATGCCGATGTTGGGGAGAACAATGGCTTAAAAACAAGTAATGATGGTAAAGAAGAGATATCTATTACCGCGCCTGAACTGCTAAACTTGAACACGGGGAGTTTTGAAGGCAGTCTGTCACAGAGGGAGAACAACAAATTGAATGATGGTTATAGCACAGCCGATTCTTCTGGTAATGAGCAGCAAAATAGAACTGTGGAAGTTGATCTTAAAGTATCAAGTCTAGTATCTACTTTTGCCAACAACAACATTATTCAGAAAATATGCTGGTTGCTTAAGTTTTACAAGAGCAATTCTACCAATACAAACCATTACATAATATGCATTTTACGGAGGATCACCGAGGATTTAGAGCTTTCTCCAATGCTGTACCAGTTGTCTCTTCTTCCCACATTTTATGATATTCTATCTGAACTGAAATCAAGTCCATGCAAGGAACATGCTAATATAGTTGATTTCCTGACAAGTCTGGTGAGAAAGATGCTAAGGAAGATAAAGAATCAGCCACTCCTTTTTGTGGAACTTCTGTTTTGGAAGACCCGAAAAGAATGCCATTACATTGATGCTGAGTACTTAGTGCATGAGCTTGGCTGTTGGAAGAAAAAAAATAAAGAGGAAAATTTTACTGGTGATGATGAAAATGGCTCGTTGATGGGCAAGCATTGGACTCCTAGAAGCATAGCCGATGCACTAGGTGAAGATGAAGCTGATGTTGTGATCAGTAATGAGTTTGAAATTCATACTGAAGCAAAGTCTGACGAAGTCGAGAGAGGCCTTGAGTCTACCACCCTGGGTGATGAGATATACGGGAAAGAACACAACGAAAATGAGCTGGCTATGGATGATAAATCCAAAAGTCTTCCGAAAAGAAAGAGACTTGTTCTTGATGCTGCACTGGAGACTGAAATTAAAGATCTTTATGAGAAATTCAAGGAGGACAGGAACTGTAGCAGACTTATTGCAGAGAATCTTGGTACTGATGTCGAAGTTTCACCTGCTCAGGTTTCCAATAAGCTTAGACGGATGGGGTTAAAAGTTTCTCAAAGAAAGAGGAGGCAATATGCAGATGAAGCCTTTTCTGCTACCTCTAAAAACCTCAAAGGAGAAAGCAATGGGGTAGAAAGAAACAATCTACTCGATTCAGATGTTTTGGGGGAAAGTTCTTTGAGTCAACCTTCGCACACGAGAAAAAGAGTTGTCGCTTTTGATAAAGTATATGAAGAGAAGATCAGAGCTTTATATGAGCAGTTTAAAGATCATAAGAGATGTAGTTCTATGATTGCAAATGCGCTGGATGCTGGTAACAAATTCACTTCTGCACAAGTTTCTCGAAAGCTCAAGCAATTGGGTCTATATGTTTCTCATCAGAAGAGGTCGAGTGATGGTGATCACAATGATTCTGTTATGGACAAGGGATTTGAGAGTGACGATGAAACATTGCTTTCATTAATAAATAGGAAAAAAAGGAAGCATCTTGCAACAGAAAAGCTCAGTTCCATCTCAACGCAGAGCATATTAATTGCTGAAGAATCTGAAGGTGTAGATGCAGAAATGTCTACGCAATGGGAGGACAGCAACCAAGCGAGTAGGTTGGAACCTATGGGGGTTGGTAAAGTGCCTTCCGATGATGTTCAGTTGAATGACTTCACAGAAGTTGAAGGTAAGGATGCTGAAGCTGGCGTCAGTATGGATGATGAGCTTGCAGATTCAGAAGGTGAAATGGATACTAATGTGTATCGTGCAAGTGCTACAACGGGAAGAAAGTTTAGGATTGTTGATCTTGAGGATGAAGATTGA 3573 39.85 MEIDGLCVICAGLGIVEEDDNGNRIGYSKSEYCLDNLKDLLRFLRRDDPQTRDVFKQVCKWNIVAKDLIPIIEYCQDDRNAVLNAVKILVFLTMPVEPTSNDIAQQIEYLWGLKSLITCCNVVAVAVSLLESPLENLDCYELSSTNSETFSEDDWKLVQLVMTLFRNVLAIQEISLQQKADGSACQLILLRDKFLEGLFRENVMDIILVITQHIDGSCSHLRQDKLLFLEIFYFIFMGQEPELIAKVSQNSNEDNVETVSSANSLKSLMEEDRRKLSRSYNMNRHSQFSGTFTRHTLDGSKLVLKGKPSPTSCNSLKQPKVCRGPIKKIAWDHGRLTSKNSKLLRLLHDFINQFLSGGYNALMQLVHEDIEKEHHSIQNNDVVVFFQVAQFAVSFQYHKFSTSKSIEADTTEAQTEHADSTFFQGNMCGPIAATMNEAMFQLVVTKWRYAFEGLKETSDFKFLSAAGSLMKNMICMLDLVLKLLPEDSKEPQTARILLYKLFYDQTDQGITQFLLNLLKSFNTHKQPKSDLADLVEMIYKVVQLMEDLQARGTLRVSKKSRRGRKAKSARIRQSEDQVAGNKTAITQNEKSIDADVGENNGLKTSNDGKEEISITAPELLNLNTGSFEGSLSQRENNKLNDGYSTADSSGNEQQNRTVEVDLKVSSLVSTFANNNIIQKICWLLKFYKSNSTNTNHYIICILRRITEDLELSPMLYQLSLLPTFYDILSELKSSPCKEHANIVDFLTSLVRKMLRKIKNQPLLFVELLFWKTRKECHYIDAEYLVHELGCWKKKNKEENFTGDDENGSLMGKHWTPRSIADALGEDEADVVISNEFEIHTEAKSDEVERGLESTTLGDEIYGKEHNENELAMDDKSKSLPKRKRLVLDAALETEIKDLYEKFKEDRNCSRLIAENLGTDVEVSPAQVSNKLRRMGLKVSQRKRRQYADEAFSATSKNLKGESNGVERNNLLDSDVLGESSLSQPSHTRKRVVAFDKVYEEKIRALYEQFKDHKRCSSMIANALDAGNKFTSAQVSRKLKQLGLYVSHQKRSSDGDHNDSVMDKGFESDDETLLSLINRKKRKHLATEKLSSISTQSILIAEESEGVDAEMSTQWEDSNQASRLEPMGVGKVPSDDVQLNDFTEVEGKDAEAGVSMDDELADSEGEMDTNVYRASATTGRKFRIVDLEDED 1190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3792450 3802003 + Cp4.1LG05g06120.1 Cpe05g00623 469828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00623 1190 PANTHER TIMEOUT/TIMELESS-2 3 1147 IPR044998 -
Cpe05g00623 1190 MobiDBLite consensus disorder prediction 631 654 - -
Cpe05g00623 1190 MobiDBLite consensus disorder prediction 574 609 - -
Cpe05g00623 1190 MobiDBLite consensus disorder prediction 555 609 - -
Cpe05g00623 1190 PANTHER PROTEIN TIMELESS HOMOLOG 3 1147 - -
Cpe05g00623 1190 Pfam Timeless protein 27 293 IPR006906 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00623 K03155 TIMELESS; timeless - csv:101218315 1919.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00623 Cpe-Chr5:3792450 Cpe05g00625 Cpe-Chr5:3807773 2.97E-27 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g835 . . . . . . . . . . . . . . . Cpe05g00623 . . . . . . . . . . . . . . . . . . . . . Chy09g01406 . . . . . . . . . . Cmo02g01116 . . . . . . . . . . . . . . . . . . . . . . . . Cme09g01951
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011825 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00623 Cpe_Chr05 FPKM 7.918009 9.300801 3.733639 3.887378 12.388371 11.63599 13.034151 9.789686 9.319552 9.6454