Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00631 ATGGAAAACGGAACATATCAAGAATATAAGCCTGAGGAGTTGTCTGAGGTTCCACCATTAATCAAACACATATCATCAATTGAAGTGGTTCCCTTTGATGGGATAGAAGAGGGTAGCCTCCCAAATAATCATTCCCCCTCTACCCTGCCTACTGGAAATACATTATCACCTGCTGAGCAAAGTGATGATGAACTTCAGTTCATTAACCATCAAAGAAAGCATTCTGTTTCTATCAGTATGCCACCCTCCCCTGTGGGAGTTCACTTACAGCCTTCAAAACGAGTTCTATTCGGTGGCGAACAGATTCTAAACAATGAAGCCTTGGGTACTGCTGCTGGGGCCAAACCACAGAAAGCTGCAAAGTTTCACTCTCAGCCAATTCCGAGGGGTTCTACGTTTGACGTGTCGAGGAACACAAATGCTGCACATCACCCTAGTATGAGAAGATTGAAGGACAAAAGATTTGATTCCTTCAAAACATGGTCTGGAAAACTTGAAAGGCAATTAACTCTACTTAGTGGAAAGTCAGCAAGACAAACTAGGCCAGAGGAAATTGAAGTGCAAAGAGAAGGAATGGAGAATAACATACCGGTTCACCGTTACTTCGATGCATTGGAAGGTCCAGAGCTGGAAACTCTAAGGGCTTCAGAGGAAATACTGCTTCCAGAAGACAGGACATGGCCTTTTCTACTCCGATTTCCTATCTCGTCGTTTGGTATCTGTCTTGGTGTTAGTAGCCAAGCAATCATGTGGAAAACACTGGCCACTTCTGTCTCCACGAAGTTTCTTCATTTGAGCTTGAAAATAAATCTCATTTTATGGATAATTTCCATTGCTCTTATAGTCACCATCGCTTCCGTTTACCTTCTGAAAATGCTTCTGTACTTCGAAGCAGTTCGTCGTGAATACTACCACCCTATTCGTGTCAACTTCTTCTTTGCACCGTTGATATCTCTCTTGTTCTTAGCCATTGGTGTTCCTCCATCAGTTGCCACTAACCTGCATCCAGCCATTTGGTATGTTCTCATGGCTCCATTTCTATGCCTTGAGCTTAAGATTTATGGGCAATGGATGTCAGGAGGCCAACGCAGATTGTCAAAAGTGGCTAATCCTACAAACCATCTTTCCGTTGTGGGGAATTTTGTGGGGGCTTTGTTGGGAGCCTCAATGGGACTAAAGGAAGGGCCCGTATTCTTCTTTGCTATTGGAATGGCTCACTATTTAGTCCTTTTTGTAACTCTCTACCAGAGACTACCAACCAATGAGACACTCCCAAAGGAACTGCATCCAGTGTTCTTTCTTTTCATAGCAGCACCAAGTGTTGCATCCATGGCATGGGCAAAAATTCAAGGTTCCTTCGACAACGCTTCACGAATCATTTACTTTATCGCCCTGTTCCTCTACTTCTCACTGGTTGTTCGAGTCAACTTTTTCCGGGGCTTTAAGTTCTCGCTGGCCTGGTGGGCATATACTTTTCCCATGACTGGTGCTGCAATTGCAGCTATAAAATACTCAACTGAAGTTACAAATACAGTAACACAAGTTCTGTCTGTTGTACTCTCTGCCACTGCTGTAATCATAGTGACAGCTCTCCTTGCATCAACGATCATCCACGCCTTTGTGCTCCGTGACCTCTTTCCTAACGACATCGCTATTGCCATTAGCAACAGAAAGCCGAAACCACAGTGGAACTGGTTGCATCATCTAAAACAAGGAAGTTCAGAAGCTCAAGACATTGAAAACTTCTTGAAGTTTTCGAACTCAGATAACAAGGATTTAGAAGCATCTGAAGGACCACCAACCCTCGTAGGCCGAGACACGAACCTTCAACCGTCAAACGAATAG 1845 43.9 MENGTYQEYKPEELSEVPPLIKHISSIEVVPFDGIEEGSLPNNHSPSTLPTGNTLSPAEQSDDELQFINHQRKHSVSISMPPSPVGVHLQPSKRVLFGGEQILNNEALGTAAGAKPQKAAKFHSQPIPRGSTFDVSRNTNAAHHPSMRRLKDKRFDSFKTWSGKLERQLTLLSGKSARQTRPEEIEVQREGMENNIPVHRYFDALEGPELETLRASEEILLPEDRTWPFLLRFPISSFGICLGVSSQAIMWKTLATSVSTKFLHLSLKINLILWIISIALIVTIASVYLLKMLLYFEAVRREYYHPIRVNFFFAPLISLLFLAIGVPPSVATNLHPAIWYVLMAPFLCLELKIYGQWMSGGQRRLSKVANPTNHLSVVGNFVGALLGASMGLKEGPVFFFAIGMAHYLVLFVTLYQRLPTNETLPKELHPVFFLFIAAPSVASMAWAKIQGSFDNASRIIYFIALFLYFSLVVRVNFFRGFKFSLAWWAYTFPMTGAAIAAIKYSTEVTNTVTQVLSVVLSATAVIIVTALLASTIIHAFVLRDLFPNDIAIAISNRKPKPQWNWLHHLKQGSSEAQDIENFLKFSNSDNKDLEASEGPPTLVGRDTNLQPSNE 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3852371 3856664 - Cp4.1LG05g06340.1 Cpe05g00631 469836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00631 614 MobiDBLite consensus disorder prediction 129 143 - -
Cpe05g00631 614 PANTHER SLAC1-LIKE PROTEIN-RELATED 16 599 - -
Cpe05g00631 614 Gene3D - 229 546 IPR038665 -
Cpe05g00631 614 PANTHER - 16 599 IPR030183 GO:0006873|GO:0008308|GO:0016021
Cpe05g00631 614 MobiDBLite consensus disorder prediction 587 614 - -
Cpe05g00631 614 MobiDBLite consensus disorder prediction 35 60 - -
Cpe05g00631 614 CDD TDT_SLAC1_like 232 535 - -
Cpe05g00631 614 Pfam Voltage-dependent anion channel 233 536 IPR004695 GO:0016021|GO:0055085
Cpe05g00631 614 MobiDBLite consensus disorder prediction 40 60 - -
Cpe05g00631 614 MobiDBLite consensus disorder prediction 114 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00631 - - - csv:101217604 992.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00631 Cpe13g00284 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00097 Cpe-Chr2:488826 Cpe05g00631 Cpe-Chr5:3852371 2.35E-70 transposed
Cpe08g00780 Cpe-Chr8:6216872 Cpe05g00631 Cpe-Chr5:3852371 4.42E-172 transposed
Cpe14g00848 Cpe-Chr14:7012586 Cpe05g00631 Cpe-Chr5:3852371 1.07E-165 transposed
Cpe15g00740 Cpe-Chr15:7712992 Cpe05g00631 Cpe-Chr5:3852371 3.20E-72 transposed
Cpe13g00284 Cpe-Chr13:2244245 Cpe05g00631 Cpe-Chr5:3852371 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g812 Blo06g01066 Blo15g00106 . Bda07g01912 Bpe03g00163 Bpe07g01000 Bma10g01268 . . . Cma02g01091 Cma15g01057 Car02g00832 Car15g00981 . Cpe05g00631 . . . . . . . . Cla01g00081 Cam01g0081 Cec01g0082 Cco01g0082 Clacu01g0081 Cmu01g0083 Cre09g2426 Cone1ag1202 Cone5ag0904 . Cone15ag0048 . Csa05g00094 Chy09g01400 . Blo07g00357 Blo09g00050 . . . Bpe12g00360 . Bma12g01185 . Cmo02g01110 Cmo15g01116 . . . . . Cpe13g00284 Bhi12g00763 . . Lac11g0088 Hepe06g0736 . Lcy12g0069 . . . . . . . Lsi09g00066 . . Cme09g01946
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003004 1 1 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 2 1 1 1 1 5 4 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00631 Cpe_Chr05 FPKM 8.662482 7.531322 8.091295 7.389218 10.803815 11.58843 12.076804 7.672429 7.45832 9.241698