Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00632 ATGGAACAGAAGCACATTTTTCTGTCTGCTTTGGGCGTTGGGGTTGGAGTTGGGGTTGGCCTTGGATTGAGCTCTGGACAAGCTGTTGGCAAATGGGTTGCTGGGAATACCTCTTCTGATGAGATTACAGGGCAGAAGATTGAACAGGAGCTCATCAGGCAGCTCGTTGATGGCAGAAATAGCGATGTTACTTTTGATGAGTTTCCTTATTATCTTAGTGAGAGGACGAGGATGCTCTTGATGAGTGCTGCATATGTTCGTTTGAAGCATTGTGACATCTCCAAGCACACCAGAAATCTTTCACCAGCGAGTCGGGCTATTTTGCTTTCAGGACCGACAGAACTGTACCACCAAATGCTTGCCAAGGCTCTGGCGCAACACTTCGAGTCGAAGTTGCTGTTGTTAGACGTTTCTGACTTTTCTCTAAAGATGCAGAGCAAATATGGTTGTGCCAAGAAAGAACCGTCATTCAAGAGGTCCATCTCTGAGGCGGCGTTGGAGCGTGTGTCTAGCGTTTGGGGTTCCTTCTCGATTCTTCCTACGAGTGGAAATACTAGAGGCAATTTAAGAAGGCAAAGCAGTACTACAGACATTCAATCAAGAAGTACCGATGGCCCGTCCAATCCTCCAAAACTTCGGAGAAATGCTTCTACTGCGTCTGATATTAGTAGCATCTCATCGAATTGTGCTTCAACAAATTCAGCTTCTGTCAAGCGCACAAATAGTTGGTGTTTTGATGAGAAACTTTTTCTTCAGTCGCTTTATAAGGTCTTGGTGTCGGTATCCGAAACCAATTCCGTAATTTTGTATCTACGAGATGTCGAGAGACTTCTTCTTCAATCACAGAGGCGGTACAATCTGTTCCATAGATTTCTGAACAAGCTCTCTGGATCAGTTCTAGTACTCGGTTCGAGAATGGTAGACTTGGAAAATGATTGCGGAGATGTCGACGACAGACTGACCTGTTTATTTCGGTATAGTGTCGAAATTCGACCCCCTGAAGACGAGAATCATCTTGTCAGCTGGAAAGCTCAATTGGAAGAGGACATGAAGATGATTCAGTTCCAAGATAACAAAAACCACATTGCTGAAGTTCTTGCTGCAAATGATCTTGAATGTGATGATCTTGGATCAATCTGCCATGCAGACACCATGGTTCTTAGTAATTATATCGAAGAAATCGTCGTATCGGCGATATCCTATCATTTAATGAACAACAGGGATCCCGAATACCGAAACGGAAAACTTCTGATATCTTCCAAGAGTTTATCCCATGGGTTGAGTATATTCCAGGAAGGAAATAATGAAGGTAAAGACACTCTAAAGCTAGAGACGAATGCAGAATCATCGAAGGAAGCCCCGGGGGACGATGCTGTCGGGGTGAAGACTGAATCAAAATCTGAAAATCCAGCTGCAGAAAACAGAGGAGAGGCAGATAAATCTGTACCTATAGTGAAGAAAGATGTTGAGAATGAAGTCCTTCCCGACAACGAATTTGAGAAGCGTATAAGACCGGAAGTTATCCCTGCAAACGAAATCGGGGTGACATTTGCAGACATAGGTTCCTTGGATGAGATCAAAGAGTCCTTACAGGAATTAGTCATGCTTCCTCTCCGACGACCAGACCTCTTTAAAGGCGGGCTTCTCAAACCTTGTAGGGGTATTTTGCTTTTCGGCCCTCCTGGTACGGGTAAAACGATGCTGGCGAAGGCCATTGCTAATGAAGCTGGAGCAAGTTTCATTAATGTTTCGATGTCCACAATCACTTCTAAATGGTTTGGGGAAGACGAAAAGAACGTTCGGGCACTGTTTACGCTTGCAGCAAAGGTCTCCCCTACAATTATTTTTGTCGATGAAGTCGATAGCATGCTTGGCCAGCGGACTAGAGTGGGAGAGCATGAGGCCATGCGGAAGATTAAAAATGAATTCATGTCACACTGGGATGGATTGCTGACTAGAAATGATGAGAGAATACTAGTTCTTGCTGCAACCAACAGGCCATTTGACCTCGATGAAGCCATCATTCGTCGATTCGAGCGCAGAATTATGGTTGGTCTTCCATCAGTGGAGAGCAGGGAAATGATCTTGAGAACTCTTCTTTCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGGTACAGTGGAAGTGATCTCAAGAATTTGTGCGTGACTGCAGCTTATCGGCCCGTTCGGGAGCTCTTGCAACAAGAGAGATTGAAGGATTTGGAAAAGAAGCAAAGAGAGCTGAAGGAGGAGCAGCAGAAGGAGGAGAAAACGGAGACAGAGATGGAGACCGAGACCAAGAACGAGAACGAGAACGACAAGAAGAAAGAAAATAACTCGGAAGATATGACCGTTACGAAAGAGGAAGAAAAAGAGGAACAAGTGATCATTCTGAGGCCTTTAAATATGGATGATATGAGACAGGCAAAAAATCAGGTTGCTGCAAGTTTTGCTTCTGAAGGATCAGTGATGAATGAGTTGAAGCAATGGAATGAGTTGTATGGAGAGGGAGGTTCAAGAAAAAAGCAACAGCTTACTTACTTCCTATAG 2574 44.33 MEQKHIFLSALGVGVGVGVGLGLSSGQAVGKWVAGNTSSDEITGQKIEQELIRQLVDGRNSDVTFDEFPYYLSERTRMLLMSAAYVRLKHCDISKHTRNLSPASRAILLSGPTELYHQMLAKALAQHFESKLLLLDVSDFSLKMQSKYGCAKKEPSFKRSISEAALERVSSVWGSFSILPTSGNTRGNLRRQSSTTDIQSRSTDGPSNPPKLRRNASTASDISSISSNCASTNSASVKRTNSWCFDEKLFLQSLYKVLVSVSETNSVILYLRDVERLLLQSQRRYNLFHRFLNKLSGSVLVLGSRMVDLENDCGDVDDRLTCLFRYSVEIRPPEDENHLVSWKAQLEEDMKMIQFQDNKNHIAEVLAANDLECDDLGSICHADTMVLSNYIEEIVVSAISYHLMNNRDPEYRNGKLLISSKSLSHGLSIFQEGNNEGKDTLKLETNAESSKEAPGDDAVGVKTESKSENPAAENRGEADKSVPIVKKDVENEVLPDNEFEKRIRPEVIPANEIGVTFADIGSLDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLEKKQRELKEEQQKEEKTETEMETETKNENENDKKKENNSEDMTVTKEEEKEEQVIILRPLNMDDMRQAKNQVAASFASEGSVMNELKQWNELYGEGGSRKKQQLTYFL 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3863595 3871930 + Cp4.1LG05g06300.1 Cpe05g00632 469837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00632 857 MobiDBLite consensus disorder prediction 754 801 - -
Cpe05g00632 857 Pfam AAA+ lid domain 707 750 IPR041569 -
Cpe05g00632 857 Gene3D - 514 775 IPR027417 -
Cpe05g00632 857 Coils Coil 857 857 - -
Cpe05g00632 857 Pfam ATPase family associated with various cellular activities (AAA) 555 685 IPR003959 GO:0005524|GO:0016887
Cpe05g00632 857 Coils Coil 739 776 - -
Cpe05g00632 857 MobiDBLite consensus disorder prediction 183 229 - -
Cpe05g00632 857 CDD AAA 553 686 - -
Cpe05g00632 857 Gene3D - 687 771 - -
Cpe05g00632 857 ProSitePatterns AAA-protein family signature. 658 677 IPR003960 GO:0005524|GO:0016887
Cpe05g00632 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 515 757 IPR027417 -
Cpe05g00632 857 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 857 - -
Cpe05g00632 857 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 857 - -
Cpe05g00632 857 SMART AAA_5 551 688 IPR003593 -
Cpe05g00632 857 MobiDBLite consensus disorder prediction 446 481 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00632 - - - csv:101216426 1400.57
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00632 Cpe13g00283 CCT
Cpe05g00632 Cpe13g00283 ECH
Cpe05g00632 Cpe14g00486 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00632 Cpe-Chr5:3863595 Cpe14g00486 Cpe-Chr14:3079211 4.22E-31 dispersed
Cpe13g00283 Cpe-Chr13:2228672 Cpe05g00632 Cpe-Chr5:3863595 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00632 Cpe_Chr05 FPKM 25.525974 27.404715 29.606983 32.83234 30.756723 27.376287 32.009464 29.615757 29.522112 31.426947