Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00637 GACGACTGGGATCTCTCCGCCGTCGTCCGGAGCTGCTATTCAGGCTCCTCCACCTCCTCCACCTCCACGGCCGCCGACCCAACTGCCGCCTCCGCCGCAGAAACCGCCTTGTCTTGTCTTGCTTCCTTAACTTTTGACGACGATCCAAACAACGTCGCATTCTCCTTTTCCGACATCCTTCACCCCCAACAGCCCAACGGCTTCCATGAATTACACCAAGCCTTCATTTCTTTCCTCCCCAATCCCGTCGCCCCCGCCGTCGCCCCCGCCGCACCGGTAATCCCCAATCCGGTTCCAACCCGCCAATCCCGACACGGAATTAAACCCATTCGACCACTGCCAGATCCCGGAGCGGTGGCGCTGCAATCCCACCACCGGCAACAGCCACTTTTCCGGCCAGACTTCCCAAATTCACCAATGACGCCTCCACACATACCCAAATCGAGAAAAAGGCAAAATCAACAAAAGAGAACCGTATGCCATGTGACTGCTGATAATCTCTCAACAGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCCTACCCAAGGAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGGGCAAGAAAGCAAGTTGAACGGAGCACTGCCGACCCAGAAACTTTCATCGTCACATACACTGGAGATCACACTCATCCACGTCCAACTCATCGGAATTCTCTTGCCGGGAGTTCCCGAAACAGGTCGTCGTCTGCAATCCCCATGAAAAACCTGACGATGGGAGACCCCGATCGGTCATTGCTCGGCACAGCCACCGTGGGCTCTCCGATGACACCGCTTAACGAAGACGGTGGGAGCGGAGAGAAAGAAGGAGAGATTTTGGAGGATTTGAGCATTGAGAGTGAGGAGTACGAGGATAATGATATTCTGATTCCAAATTTGATGATGAGAAATGAAATCTTTGTTGGGTTTGAGGAGCTTGGTTGTAGTCCTCGAAGGAAGGCT 987 53.39 DDWDLSAVVRSCYSGSSTSSTSTAADPTAASAAETALSCLASLTFDDDPNNVAFSFSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPVIPNPVPTRQSRHGIKPIRPLPDPGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQNQQKRTVCHVTADNLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERSTADPETFIVTYTGDHTHPRPTHRNSLAGSSRNRSSSAIPMKNLTMGDPDRSLLGTATVGSPMTPLNEDGGSGEKEGEILEDLSIESEEYEDNDILIPNLMMRNEIFVGFEELGCSPRRKA 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3893194 3894413 - Cp4.1LG05g06330.1 Cpe05g00637 469842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00637 329 MobiDBLite consensus disorder prediction 130 157 - -
Cpe05g00637 329 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 2 321 - -
Cpe05g00637 329 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 2 321 IPR044810 GO:0003700
Cpe05g00637 329 Gene3D WRKY domain 151 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe05g00637 329 SMART WRKY_cls 168 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe05g00637 329 SUPERFAMILY WRKY DNA-binding domain 163 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe05g00637 329 MobiDBLite consensus disorder prediction 220 258 - -
Cpe05g00637 329 Pfam WRKY DNA -binding domain 170 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe05g00637 329 ProSiteProfiles WRKY domain profile. 163 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe05g00637 329 MobiDBLite consensus disorder prediction 231 250 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00637 Cpe13g00277 CCT
Cpe05g00637 Cpe13g00277 ECH
Cpe05g00637 Cpe14g00491 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00637 Cpe-Chr5:3893194 Cpe08g00531 Cpe-Chr8:3446773 4.96E-52 dispersed
Cpe13g00277 Cpe-Chr13:2202479 Cpe05g00637 Cpe-Chr5:3893194 8.19E-134 wgd
Cpe03g01751 Cpe-Chr3:13267612 Cpe05g00637 Cpe-Chr5:3893194 3.32E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49522 PF03106 WRKY 6.60E-26 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00637 K13425 - cmo:103482922 401.749