Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00646 ATGTGGTTATTCAGAAGAAAAGGGCCCTCCGGGTTTTCGTCTTCTTCCACCGCTGAGGAAGTTACAAACGGAATCGATGGCACAGGACTCACCGCCATTGTTACAGGTCCGAATTTACTCTACAACAGTTCTTGTTTATGTATTTTGAACTGGGTATCATCCTCCTTCGATTATGCATCTGGGTTTATGCTAATAGGAGCGTCGAGTGGTATTGGCTCTGAAACTGCGCGTGTTCTTGCATTACGCGGAGTCCATGTTGTTATGGGTATTAGGAACTTAGAAGCTGGTAGAAATGTAAGAGAAACCATCATCAAGGAGAACCCCTCTGCAAAAATTGATGCCATGGAGTTGGATCTTAGCTCCATGGCTTCTGTGAGAAAATTTGCCTCAAATTATCAGTCAGCTGGGCTTCCACTTAATATCCTCATTAATAATGCAGGAGTCATGGCTGCCCCTTTTGGACTTTCAAAAGATAACATAGAACTGCAATTTGCAACAAATCACTTAGGTCATTTCCTCTTGACAGATCTACTGTTGGATAGTATGAAGAAAACTGCCATTAAAAGTAAAAAAGAAGGAAGAATTGTTAACGTCTCCTCAGAAGCTCACCGTTATACATATCCTGAAGGCATCCGATTCGACGGAATTAACGACGAATCAAGGTACAAAAAAATGCTAGCTTATGGCCAATCAAAGTTATGTAATGTTCTGCATGCCAATGAACTTACAAGACGTTTCAAGGAAGAAGGAGTAAACATAACTGCAAACTCACTTCACCCAGGAATAATTGCCACAAATCTTTTCCGCCACTTCAATTTTGGCAATGGTATTGCGAACACTGTCGGCAAACTCGTATTTAAAAATGTTCAACAGGGTGCAGCAACAACCTGCTATGTAGCATTGCATCCACAAGTGAAGGGAGTGAGTGGTGAATATTTTCTGAATAGTAACCTAAACAAGGCAAGTCAACATGGGCAGGATGTTGATCTGGCTAAGAAGCTTTGGGATTTTACCACTAACTTGCTCAAATAA 1032 41.28 MWLFRRKGPSGFSSSSTAEEVTNGIDGTGLTAIVTGPNLLYNSSCLCILNWVSSSFDYASGFMLIGASSGIGSETARVLALRGVHVVMGIRNLEAGRNVRETIIKENPSAKIDAMELDLSSMASVRKFASNYQSAGLPLNILINNAGVMAAPFGLSKDNIELQFATNHLGHFLLTDLLLDSMKKTAIKSKKEGRIVNVSSEAHRYTYPEGIRFDGINDESRYKKMLAYGQSKLCNVLHANELTRRFKEEGVNITANSLHPGIIATNLFRHFNFGNGIANTVGKLVFKNVQQGAATTCYVALHPQVKGVSGEYFLNSNLNKASQHGQDVDLAKKLWDFTTNLLK 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3947924 3952518 + Cp4.1LG05g06450.1 Cpe05g00646 469851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00646 343 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 64 317 IPR036291 -
Cpe05g00646 343 PANTHER RETINOL DEHYDROGENASE 2 37 - -
Cpe05g00646 343 PANTHER RETINOL DEHYDROGENASE 63 343 - -
Cpe05g00646 343 PRINTS Glucose/ribitol dehydrogenase family signature 61 78 IPR002347 -
Cpe05g00646 343 PRINTS Glucose/ribitol dehydrogenase family signature 187 203 IPR002347 -
Cpe05g00646 343 PRINTS Glucose/ribitol dehydrogenase family signature 137 148 IPR002347 -
Cpe05g00646 343 PRINTS Glucose/ribitol dehydrogenase family signature 251 268 IPR002347 -
Cpe05g00646 343 Pfam short chain dehydrogenase 64 210 IPR002347 -
Cpe05g00646 343 Gene3D - 26 343 - -
Cpe05g00646 343 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 63 343 - -
Cpe05g00646 343 CDD retinol-DH_like_SDR_c_like 66 335 - -
Cpe05g00646 343 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 37 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00646 - - - csv:101214020 539.265
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00646 Cpe13g00146 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00712 Cpe-Chr2:4497055 Cpe05g00646 Cpe-Chr5:3947924 9.44E-32 dispersed
Cpe05g00646 Cpe-Chr5:3947924 Cpe08g01155 Cpe-Chr8:8589141 1.22E-128 dispersed
Cpe16g00788 Cpe-Chr16:7748495 Cpe05g00646 Cpe-Chr5:3947924 5.18E-33 dispersed
Cpe20g00048 Cpe-Chr20:215661 Cpe05g00646 Cpe-Chr5:3947924 1.95E-18 dispersed
Cpe13g00463 Cpe-Chr13:4878115 Cpe05g00646 Cpe-Chr5:3947924 4.28E-27 transposed
Cpe14g00505 Cpe-Chr14:3196950 Cpe05g00646 Cpe-Chr5:3947924 3.04E-155 transposed
Cpe13g00263 Cpe-Chr13:2035885 Cpe05g00646 Cpe-Chr5:3947924 2.23E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g1 . . . Bda08g00515 . Bpe07g00104 . Bma14g00608 . Cmo16g00658 Cma02g01438 . Car02g01208 . . . Cpe05g00646 . . . . . . . Cla07g00786 Cam07g0848 Cec07g0901 Cco07g0883 Clacu07g0823 Cmu07g0826 Cre07g1184 . . . . . Csa05g00266 . . . . Bda07g00484 . . Bpe11g00661 . Bma12g00073 . Cmo02g01473 Cmo15g01132 . Cma16g00602 Car06g00910 . . Cpe13g00146 Bhi12g00184 . . . . . . Cla01g00250 Cam01g0255 Cec01g0247 Cco01g0261 Clacu01g0253 Cmu01g0243 Cre09g2266 Lsi09g00241 . Chy07g01225 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00646 Cpe_Chr05 FPKM 10.558837 11.837235 14.724505 14.49329 29.362669 31.088842 31.352158 19.736176 19.586544 20.377922