Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00650 AGAGAGAAAGCTAAGATGTTGGTTGAAGAAGCTTTTGGGTTAGTGATAATGGCGTTCTTTACTTCCTTGCTCTTCATGCTATTGTTTTCTTGTTGGATTTCACCTTTTTTAGCCCACAAAAAGCTCAAGCGAAATGGGTTTCGAGGTCCGACCCCGAGTTTTCCTCTCGGGAATATTAGCGAGATGAAACGGACGAGCTTCGGTCGTGTGTTCGAGTCTTTGACGCATGATATACATTCCATTGTGTTTCCCTACTTTTCTCGGTGGCAAGCTGCCCATGGAAAAATATTTACGTACTGGTTAGGGACAGAGCCGTTCTTGTACATTGCAGAGCCGGAGTTTGTGAGGATGTTGTCGAGGGAAGTGCAAGCTAAGTACTGGGGGAAGCCGTCGGTGTTCAAACGTGATAGGAAATCGATGTTTGGGAATGGATTGGTGATGGCTGAAGGAGACGAGTGGGTTCGACAAAGACACGTCATTACTCCTGCATTTAATCCTTCCAACTTAAAGGCAATGGCGAGCTTAATGGTGGAGTCCACCACCCAAATGCTGGACAGGTGGGCCCACCTCGTACTCTCCGGCCATCCACAAATCGAAGTGGAAAACGAAATCACTTCCACCGCCGGCGAAATCATCGCCAAAACCAGCTTTGGAATCGACCATATAAGCGGCCGACAAGTCTTCCACAAACTCAGGAATCTCCAGATGACACTCTTTAAAACCAACCGTCTTGTCGGAGTTCCGTTCGCCGGGATTTTGATCGCCGGCAAGGCCCGAGAGGCCAAACGCCTTGGTGAAGAGATCGACGAGCTGTTTCGAGAGGTGATTACGGCGAGGAGAGAGAATCAGGCGGCGGCGGCGGCGGCGGCGGAAGTGATGGGATGGGTAATGAGCGAGGTTCTACGTCTATACCCGTCCGCACCCAACGTGCAAAGGCAAGCTAGAAGAGACATTACAGTAAACGGACTGACGATCCCGAACGGCACCAACATGTGGATAGATGTGGTGGCCATGCATCACGACGAGGCCCTTTGGGGCGAGCAGGTGAACGAGTTTCGGCCGGAGAGATTCGAACACGACGGGGTAGCTGGGGGGTGCAGCCACAAGATGGGGTATTTGCCGTTTGGGTTTGGAGGAAGAATGTGCGTTGGAAGGCACTTGACGTTCATGGAGTATAAGATTGTGTTGACGCTTATTTTGTGTAGGTTTTCTTTCACATTGTCTCCTGATTACTGCCATTCGCCTTGCATTATGCTGTCGCTCCGGCCCGCGCATGGTCTACCTCTCATTTTTCAACTACTGGAACACTAA 1311 50.5 REKAKMLVEEAFGLVIMAFFTSLLFMLLFSCWISPFLAHKKLKRNGFRGPTPSFPLGNISEMKRTSFGRVFESLTHDIHSIVFPYFSRWQAAHGKIFTYWLGTEPFLYIAEPEFVRMLSREVQAKYWGKPSVFKRDRKSMFGNGLVMAEGDEWVRQRHVITPAFNPSNLKAMASLMVESTTQMLDRWAHLVLSGHPQIEVENEITSTAGEIIAKTSFGIDHISGRQVFHKLRNLQMTLFKTNRLVGVPFAGILIAGKAREAKRLGEEIDELFREVITARRENQAAAAAAAEVMGWVMSEVLRLYPSAPNVQRQARRDITVNGLTIPNGTNMWIDVVAMHHDEALWGEQVNEFRPERFEHDGVAGGCSHKMGYLPFGFGGRMCVGRHLTFMEYKIVLTLILCRFSFTLSPDYCHSPCIMLSLRPAHGLPLIFQLLEH 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3968437 3971141 - Cp4.1LG05g06570.1 Cpe05g00650 469855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00650 436 PRINTS P450 superfamily signature 373 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe05g00650 436 PRINTS P450 superfamily signature 110 123 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe05g00650 436 PRINTS P450 superfamily signature 295 306 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe05g00650 436 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe05g00650 436 Coils Coil 254 281 - -
Cpe05g00650 436 PANTHER CYTOCHROME P450 FAMILY MEMBER 290 430 - -
Cpe05g00650 436 PRINTS E-class P450 group I signature 382 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe05g00650 436 PRINTS E-class P450 group I signature 372 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe05g00650 436 PRINTS E-class P450 group I signature 90 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe05g00650 436 Gene3D Cytochrome P450 36 289 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe05g00650 436 PANTHER CYTOCHROME P450 FAMILY 72 PROTEIN 15 283 - -
Cpe05g00650 436 PANTHER CYTOCHROME P450 FAMILY 72 PROTEIN 290 430 - -
Cpe05g00650 436 PANTHER CYTOCHROME P450 FAMILY MEMBER 15 283 - -
Cpe05g00650 436 SUPERFAMILY Cytochrome P450 45 431 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe05g00650 436 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 375 384 IPR017972 GO:0005506|GO:0016705
Cpe05g00650 436 Pfam Cytochrome P450 262 411 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe05g00650 436 Pfam Cytochrome P450 79 283 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe05g00650 436 Gene3D Cytochrome P450 290 434 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00650 - - - csv:101220403 436.032
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00650 Cpe09g00087 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00650 Cpe-Chr5:3968437 Cpe12g00070 Cpe-Chr12:412051 2.71E-61 dispersed
Cpe05g00650 Cpe-Chr5:3968437 Cpe09g00087 Cpe-Chr9:507970 7.01E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g696 Blo06g01127 Blo15g00169 . . Bpe03g00123 Bpe07g00936 . . . Cmo18g01273 Cma02g01069 . Car02g00812 . Sed01g3583 Cpe05g00650 . Bhi01g01311 Tan01g0246 Cmetu06g0984 . Hepe07g0152 Mch10g0150 . Cla01g00435 Cam01g0458 Cec01g0447 Cco01g0469 Clacu01g0457 Cmu01g0436 Cre09g2076 . . . . Lsi05g01219 . . Cme06g01006 . . Bda06g00685 Bda15g00726 . . Bma08g00324 . . Cmo02g01087 . . Cma18g01250 . Car18g01157 Cpe09g00087 . Bhi12g00509 . . Lac11g0028 Hepe06g0699 . Lcy12g0026 Cla05g00887 Cam05g0974 Cec05g0978 Cco05g0977 Clacu05g0961 Cmu05g0918 Cre05g1003 . Csa03g01719 Chy06g00951 Cme09g01553
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002160 5 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00650 Cpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0