Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00653 ATGGCTCAGAAAGTGGTGCTGAAGGTAATGACGATGACGGACGACAAATCGAAGCAGAAAGCAATCGAAGCCGCTGCCGACATCTACGGCGTTGATTCGATCGCCGCGGATCTGAAGGATCAGAAACTTACGGTGGTTGGATCGATGGACGCGGTGGCGATTGTGAAAAAGTTGAAGAAAGTAGGTAAAGTGGATATTATATCAGTCGGACCTGCAAAGGAAGAGAAGAAGGAAGAGAAGAAGGAAGAAAAGAAGGAAGAGAAGAAAGAGGAGAAGAACTCTCAAAGTTTGAGCTACCAAGCTGGAGAAGCCAAAGGCCAAGCCCAGGAGAAGGCGAGTAATTTGATGGACAAGGCAAGTGATACACTCCAATCAACCAAGGAGTCGATACAAGAGGCCGGACAACAGATAGCGGCCAAGGCTCACGTGGTGCTGAAGGTAATGACGATGACGGACGACAAATCGAAGCAGAAAGCAATCGAAGCCGCTGCCGACATCTACGGCGTTGATTCGATCGCCGCGGATCTGAAGGATCAGAAACTTACGGTGGTTGGATCGATGGACGCGGTGGCGATTGTGAAAAAGTTGAAGAAAGTAGGTAAAGTGGATATTATATCAGTCGGACCTGCAAAGGAAGAGAAGAAGGAAGAGAAGAAGGAAGAAAAGAAGGAAGAGAAGAAAGAGGAGAAGAAGTAA 696 47.7 MAQKVVLKVMTMTDDKSKQKAIEAAADIYGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKEEKKEEKNSQSLSYQAGEAKGQAQEKASNLMDKASDTLQSTKESIQEAGQQIAAKAHVVLKVMTMTDDKSKQKAIEAAADIYGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKEEKKEEKK 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3977030 3980454 + Cp4.1LG05g06460.1 Cpe05g00653 469858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00653 231 SUPERFAMILY HMA, heavy metal-associated domain 143 201 IPR036163 GO:0046872
Cpe05g00653 231 Coils Coil 72 97 - -
Cpe05g00653 231 MobiDBLite consensus disorder prediction 69 113 - -
Cpe05g00653 231 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 2 105 - -
Cpe05g00653 231 MobiDBLite consensus disorder prediction 209 231 - -
Cpe05g00653 231 Gene3D - 136 213 - -
Cpe05g00653 231 Gene3D - 1 75 - -
Cpe05g00653 231 MobiDBLite consensus disorder prediction 69 94 - -
Cpe05g00653 231 SUPERFAMILY HMA, heavy metal-associated domain 2 63 IPR036163 GO:0046872
Cpe05g00653 231 Coils Coil 116 136 - -
Cpe05g00653 231 Pfam Heavy-metal-associated domain 7 62 IPR006121 GO:0046872
Cpe05g00653 231 Pfam Heavy-metal-associated domain 145 200 IPR006121 GO:0046872
Cpe05g00653 231 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 132 231 - -
Cpe05g00653 231 PANTHER PROTEIN PXR1-LIKE ISOFORM X1 132 231 - -
Cpe05g00653 231 PANTHER PROTEIN PXR1-LIKE ISOFORM X1 2 105 - -
Cpe05g00653 231 Coils Coil 210 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00653 - - - cmos:111459098 139.813
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00653 Cpe-Chr5:3977030 Cpe11g00743 Cpe-Chr11:5810077 2.01E-21 dispersed
Cpe05g00652 Cpe-Chr5:3975541 Cpe05g00653 Cpe-Chr5:3977030 2.76E-27 tandem
Cpe01g02455 Cpe-Chr1:20340942 Cpe05g00653 Cpe-Chr5:3977030 4.13E-16 transposed
Cpe06g00962 Cpe-Chr6:9059184 Cpe05g00653 Cpe-Chr5:3977030 2.75E-19 transposed
Cpe15g00313 Cpe-Chr15:4037855 Cpe05g00653 Cpe-Chr5:3977030 9.74E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g667 Blo06g01123 Blo15g00165 . . . Bpe07g00940 . . . . Cma02g01066 . Car02g00810 . . Cpe05g00653 . . . . . . . . . . . . . . . Cone1ag1156 . Cone14ag0087 Cone15ag0091 . . . . . . Bda06g00681 Bda15g00729 . . . Bma12g01123 . Cmo02g01084 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004263 3 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 1 0 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00653 Cpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0