Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00655 ATGTTCAAATCATGGAGCAAGAAGCAGAAGATCAAAGCTGTATTCAAATTACAGTTCCAGGCAACTCAGGTGCCGAAGTTGAAGAAATCGGCTTTGATGATATCTTTGGTGCCAGATGATGTGGGGAAGGCAACAGTGAAGCTAGAGAAAGCTGCTATTCAGGATGGAACTTGTTTCTGGGAGAATCCTGTCTATGAAACAGTCAAGCTTGTTAGAGAGATAAAAACAGGAAAAATCAATGAGAAAATTTACCATTTTGTTGTTTCAACTGGATCATCCAAATCTGGCTTTGTAGGTGAAGCTTCGATCGATTTTGCAGATTTTGAGGCGGAGACTGAACCCATGACTGTTTCCCTACCTCTTAAGTTTGCAAACTCTGGTGCCATATTACACGTTACCATTCACAAGATGGAAGGGGATAATGACCAAGGGGATTATGAAGAGAGTGGAGGCGCAGCACTTCAACATGAGAATAGCTTTAATAGCCAGCTTAGCTTTTCTAGTACAGAAGGCAACCATTATCTCATAGAAAATGGTGACCAAAATACATTACGTGAGGATGCTGAACAAAATGGCAACTCTAGAGTGCCCCCTGGCTCTAGTTCAGCTAAATTTGCATCATACTGGGATGGTAACAATGGTGAAAGAAGTACTCAACAGGGTTCCAGATCAATGACGAATGGTGTACGAAGTCCTACCCTCTTGTCACCCCCTAGACAGAACTCCATGCCTAGGAAGGCAACAGTTGACACCACTAGAGTGAAAAACCAAGCACACGAGCGATCAAATACAGAATGGTCCCTGGGTTCAGCTTCAGATGGAAGTTTTGGCGACTCTGCAAATAGTCCTGAAGAAAACACTTCAAGAGAGAGGATGCACCAGGTCCCTAATAGTTCTATTGAAAGAGTAAAGAATGAAAATGTAATGCTCACGAGAAAGCTAGAAGTAACAGAGCTGGAATTGCAGTCTCTTCGCAAACAGGTCACAAAGGAGACTATACAAGGGCAGAATCTATCACGACAAATCATTTGCCTCACTGAGGAAAGAGATTCACTCAAAACAGAGTGCAAACAACTCAAGTTCTTGAAGAAATGCAATGACGAGTCTGAGGACTCGAAGACTTTAAAGTCTGAGATTAAGGAAGCAAGGGTTCAGTTGGCAGCAATAGGGGAGGAGCTTAAGCAGGAAAAGGAAGTACGAACTGATCTTCAGCTACAACTGCAGATAACAAAGGAGTCCAACTCTGATTTAGTTCTTGCTGTGAGAGATCTTGAAGAAATGATTGAGCTAAAAAATAGGGTAATAGCTGATCTATCAAGAAGTTTAGAATCCTGGGAGAGTGATAGAGAACAGGAAGCTGTTGGCCATTGCAAAGAGAATAATGATAAGGACCCAAAACTCTCAAAAGAATTGATTCAAGAGTATGACGATGTCAAGGAAGTCGACATGTTGAAACAGGAGATCAAAGATTTAAATAGTGAAATAGAAATGCACTTGAAGAACATGGAAGAGCTAGAAATGCATTTAGAACAACTTATGTCGGAAAATGAAATTCTCAAGCGAGAAAACAGTGACATGTCTGCAAAGTTAGAGAGAAACAAGACAGAATATCAAATAAAACAGAATGAATATTCAGGTTCTCTGGCTGTTATAAGAGAACTTGAATCCGAAATAGAAAGACTAGAAGAGAAACTCCAAATACAAACCGAGGAGTTTACAGAATCTTTGATCTCAATTAATGAACTTGAAGGTCAGATCAAGCGCTTGGAGAGAGAATTGGAAAAGCAGAAACACGAGTATTATGATGAACTCAATACCACAAAACATGCCAATGTGAAGTTGGAAAAAATGGCTATAGAAGCCCAGGAAATATTGAGTAAGACAAGGTGGAAAAGTGCCATAAAAGCCGTCATTCTTCAGGAGAGAAGTAGAAAGTTATCGATGGAAATGGCTTCCAAGTTAAATGATAATGAAAAGAGAATCACTAAAGCAGTCAAAGAAATCAATGAGTTGCGTCTGCAGAAAATAGTATTGAAAGAAATGCTCCAGAAGTCTAAGGAAGAGTCCAGGCGAAATAAAGAACAAAATGAAGAAAAACTGCATGGCCTTTCCTTCCAGCTAGAGTTAAAAGCAAAAGAAATGCATCACATGTCAATGGAGCTAGATAACAAGTCTAGACGACTTGAAGATGCAAAAAAACAGGAAGACTATCAGCAGGAGGAAATCCAAATACTGAAATCAAATATAGAAAAAATAAATGCAGAAAAGCACACTAAAAAGCAGGCAGAGAGAGAACAACCTGAATGTTTGGTCTCTGAAATGGAAGCATTGGAAGAAAGAAGTAAAGAAAAGGAGATTTGGGAAAAAGAGATGGCTTTTTCGAAGAGAGAAGTAGAAAAGGCACAGGAAGAGCTTACTAGAATTAAAGTTTCCAAACACGAACAAGATACATTAATCGACAATCTGCTAGCTGAGATGGAAATTCTTAGATCCCAAATTAATGAGTTAAAGAAGGAGTCACAGACAGAAAATTCTGAGAAAGAAAACCTAAGAAAACAGGTATTCCAATTAAAGGGTGAACTAGAAAATAAGGAGAGAACTTCTGGCACATCAAACATCAAGTTGGAAAGTCAAGAAATTTCAGCTTTGAATCGAAACTCAGCATCAATTCATAATGGATCTCAAACACTTACGCATACCAAACAGGAGCTTTCAACTTCAGGAGAGGTGATGCAATTGCTTCAGGAAACAAACCATTCTGGTATCACCATAGCAAGTAATAAAGAAGAGAAAGCGAACCAGAGCAATGTACATGAAGCACTTTGTGGAAGGAAAGTGGACTCTAACTCATCAAATAAGGAACTGAAATCGTCAACTGCTGGGAAAGGTACTGAGGACTGTAATATTGATCTCCTTAAGGAGATGTCTTCCCTAAAGGAGAGGAACCAAACTATGGAAAGAGAACTGAAGGAAATGGAAGAGAGATACTCAGAAATAAGTCTCAAATTTGCAGAAGTAGAAGGCGAAAGACAACAACTTGTAATGACTGTGCGAAACCTGAAAAATAGTAAAAGAAATTAG 3081 39.18 MFKSWSKKQKIKAVFKLQFQATQVPKLKKSALMISLVPDDVGKATVKLEKAAIQDGTCFWENPVYETVKLVREIKTGKINEKIYHFVVSTGSSKSGFVGEASIDFADFEAETEPMTVSLPLKFANSGAILHVTIHKMEGDNDQGDYEESGGAALQHENSFNSQLSFSSTEGNHYLIENGDQNTLREDAEQNGNSRVPPGSSSAKFASYWDGNNGERSTQQGSRSMTNGVRSPTLLSPPRQNSMPRKATVDTTRVKNQAHERSNTEWSLGSASDGSFGDSANSPEENTSRERMHQVPNSSIERVKNENVMLTRKLEVTELELQSLRKQVTKETIQGQNLSRQIICLTEERDSLKTECKQLKFLKKCNDESEDSKTLKSEIKEARVQLAAIGEELKQEKEVRTDLQLQLQITKESNSDLVLAVRDLEEMIELKNRVIADLSRSLESWESDREQEAVGHCKENNDKDPKLSKELIQEYDDVKEVDMLKQEIKDLNSEIEMHLKNMEELEMHLEQLMSENEILKRENSDMSAKLERNKTEYQIKQNEYSGSLAVIRELESEIERLEEKLQIQTEEFTESLISINELEGQIKRLERELEKQKHEYYDELNTTKHANVKLEKMAIEAQEILSKTRWKSAIKAVILQERSRKLSMEMASKLNDNEKRITKAVKEINELRLQKIVLKEMLQKSKEESRRNKEQNEEKLHGLSFQLELKAKEMHHMSMELDNKSRRLEDAKKQEDYQQEEIQILKSNIEKINAEKHTKKQAEREQPECLVSEMEALEERSKEKEIWEKEMAFSKREVEKAQEELTRIKVSKHEQDTLIDNLLAEMEILRSQINELKKESQTENSEKENLRKQVFQLKGELENKERTSGTSNIKLESQEISALNRNSASIHNGSQTLTHTKQELSTSGEVMQLLQETNHSGITIASNKEEKANQSNVHEALCGRKVDSNSSNKELKSSTAGKGTEDCNIDLLKEMSSLKERNQTMERELKEMEERYSEISLKFAEVEGERQQLVMTVRNLKNSKRN 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3988577 3994349 - Cp4.1LG05g06560.1 Cpe05g00655 469860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00655 1026 Coils Coil 365 399 - -
Cpe05g00655 1026 Coils Coil 481 536 - -
Cpe05g00655 1026 Coils Coil 544 606 - -
Cpe05g00655 1026 Coils Coil 300 334 - -
Cpe05g00655 1026 Coils Coil 714 765 - -
Cpe05g00655 1026 ProSiteProfiles C2 NT-type domain profile. 3 138 IPR019448 -
Cpe05g00655 1026 Coils Coil 968 1026 - -
Cpe05g00655 1026 Coils Coil 421 441 - -
Cpe05g00655 1026 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 7 137 IPR019448 -
Cpe05g00655 1026 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 1026 - -
Cpe05g00655 1026 Coils Coil 777 811 - -
Cpe05g00655 1026 MobiDBLite consensus disorder prediction 261 283 - -
Cpe05g00655 1026 MobiDBLite consensus disorder prediction 188 251 - -
Cpe05g00655 1026 Coils Coil 654 699 - -
Cpe05g00655 1026 MobiDBLite consensus disorder prediction 188 300 - -
Cpe05g00655 1026 Coils Coil 819 867 - -
Cpe05g00655 1026 PANTHER BNAC08G20130D PROTEIN 1 1026 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00655 - - - csv:101208579 1559.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00655 Cpe13g00164 CCT
Cpe05g00655 Cpe13g00164 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00655 Cpe-Chr5:3988577 Cpe14g00498 Cpe-Chr14:3163908 1.23E-167 dispersed
Cpe15g00316 Cpe-Chr15:4103034 Cpe05g00655 Cpe-Chr5:3988577 0 wgd
Cpe05g00319 Cpe-Chr5:1778901 Cpe05g00655 Cpe-Chr5:3988577 9.08E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g663 Blo06g01120 . . . . . . . . . Cma02g01064 . Car02g00807 . . Cpe05g00655 . . . . . . . . Cla01g00281 Cam01g0291 Cec01g0284 Cco01g0297 Clacu01g0290 Cmu01g0277 Cre09g2230 . . Cone14ag0089 Cone15ag0095 . Csa05g00299 Chy09g01206 . . . . Bda15g00731 . Bpe12g00427 . . . Cmo02g01081 Cmo15g01279 . . . . . Cpe13g00164 Bhi12g00227 . . Lac11g2114 Hepe06g1563 . Lcy12g1671 . . . . . . . . . . Cme09g01743
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007478 1 1 1 0 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00655 Cpe_Chr05 FPKM 2.028986 2.751806 2.761907 2.84164 3.365566 2.032606 3.598455 2.213062 2.004686 2.454904